Sample overview
| Species: | Human |
| Biosample type: | Cell line |
| Tissue type: | Colon |
| Data source: | ENCODE |
| Biosample name: | HCT116 |
| Sample ID: | Sample_01_0034 |
| SE ID | SE Region | Size | Rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|
| SE_01_003400172 | chr1:149838065-149846395 |
8330 | 172 | 1 | 92 | 107 | 1 | 55 | 329 | HIST2H2AA4,HIST2H3A,HIST2H2BF,HIST2H4B,HIST2H3D,HIST2H2BE,HIST2H2BC,HIST2H2AB,HIST2H2AC,HIST2H3C,HIST2H2AA3 |
| SE_01_003400144 | chr1:149847685-149855752 |
8067 | 144 | 1 | 61 | 13 | 0 | 54 | 463 | HIST2H2BC,HIST2H3A,HIST2H2AA4,HIST2H2BF,BOLA1,HIST2H4B,HIST2H3D,HIST2H2BE,HIST2H2AB,HIST2H2AC,HIST2H3C,HIST2H2AA3 |
| SE_01_003400329 | chr1:149884188-149889429 |
5241 | 329 | 1 | 129 | 42 | 0 | 66 | 509 | HIST2H2BE,HIST2H2AB,HIST2H2AC,BOLA1,HIST2H2BC,SF3B4,MTMR11,SV2A,HIST2H3C,HIST2H2AA3 |
| SE_01_003400238 | chr1:153564317-153573699 |
9382 | 238 | 2 | 248 | 62 | 0 | 51 | 168 | S100A2,S100A5,S100A3,S100A14,S100A16,S100A4,S100A6 |
| SE_01_003400293 | chr1:154969847-154977122 |
7275 | 293 | 1 | 204 | 55 | 3 | 80 | 580 | SHC1,CKS1B,MIR4258,PYGO2,PBXIP1,FLAD1,ZBTB7B,PMVK,LENEP |
| SE_01_003400276 | chr1:154998856-155026801 |
27945 | 276 | 4 | 620 | 338 | 3 | 660 | 2220 | DCST2,ZBTB7B,ADAM15,PYGO2,EFNA4,MIR4258,FLAD1,PBXIP1,DCST1,SHC1,CKS1B,LENEP |
| SE_01_003400239 | chr1:155127482-155137774 |
10292 | 239 | 2 | 260 | 224 | 3 | 113 | 1037 | SLC50A1,EFNA1,EFNA3,DPM3,TRIM46,KRTCAP2 |
| SE_01_003400055 | chr1:156096045-156131120 |
35075 | 55 | 5 | 840 | 412 | 4 | 249 | 695 | LMNA,ROBLD3,RAB25,SEMA4A,UBQLN4,MEX3A |
| SE_01_003400211 | chr1:156744727-156753291 |
8564 | 211 | 1 | 212 | 127 | 0 | 84 | 542 | HDGF,C1ORF66,PRCC,ISG20L2,MRPL24,CRABP2 |
| SE_01_003400272 | chr1:15832548-15851181 |
18633 | 272 | 2 | 527 | 524 | 4 | 83 | 732 | SPEN,FLJ37453,UQCRHL |
| SE_01_003400056 | chr1:16138584-16189566 |
50982 | 56 | 9 | 1396 | 1215 | 4 | 190 | 459 | EPHA2,ARHGEF19,C1ORF89 |
| SE_01_003400060 | chr1:172869827-172935858 |
66031 | 60 | 11 | 1561 | 272 | 11 | 85 | 0 | TNFSF18 |
| SE_01_003400274 | chr1:202005426-202064964 |
59538 | 274 | 8 | 1646 | 272 | 3 | 113 | 1691 | RNPEP,ELF3,TIMM17A |
| SE_01_003400116 | chr1:223699415-223739071 |
39656 | 116 | 6 | 1037 | 491 | 3 | 81 | 419 | CAPN2,CAPN8 |
| SE_01_003400264 | chr1:23553759-23562971 |
9212 | 264 | 2 | 340 | 73 | 1 | 134 | 382 | ID3,E2F2 |
| SE_01_003400305 | chr1:244832544-244843182 |
10638 | 305 | 2 | 290 | 112 | 1 | 24 | 422 | FAM36A,NCRNA00201,HNRNPU |
| SE_01_003400334 | chr1:26691603-26706697 |
15094 | 334 | 2 | 347 | 148 | 1 | 344 | 600 | ARID1A |
| SE_01_003400199 | chr1:26848012-26873035 |
25023 | 199 | 5 | 631 | 372 | 0 | 196 | 1309 | SFN,ZDHHC18,GPATCH3,GPN2,NR0B2,NUDC |
| SE_01_003400166 | chr1:26989565-27013910 |
24345 | 166 | 2 | 618 | 189 | 0 | 194 | 1254 | TRNP1,FAM46B,C1ORF172 |
| SE_01_003400159 | chr1:27525323-27570053 |
44730 | 159 | 6 | 1121 | 188 | 3 | 728 | 1816 | AHDC1,WASF2 |
| SE_01_003400080 | chr1:28499586-28538866 |
39280 | 80 | 6 | 1136 | 904 | 1 | 0 | 1725 | SNHG3,PHACTR4,RCC1,SNORA44,SNORD99,SNORA61,TRNAU1AP,SNORA16A,SNHG12 |
| SE_01_003400214 | chr1:32757452-32774049 |
16597 | 214 | 5 | 471 | 173 | 1 | 200 | 1418 | KIAA1522,YARS,S100PBP |
| SE_01_003400339 | chr1:36372916-36402837 |
29921 | 339 | 3 | 831 | 266 | 3 | 111 | 462 | LSM10,STK40,OSCP1,FAM176B |
| SE_01_003400294 | chr1:42922846-42968261 |
45415 | 294 | 8 | 1326 | 674 | 5 | 224 | 1262 | FLJ32224,SLC2A1 |
| SE_01_003400169 | chr1:43347914-43374942 |
27028 | 169 | 4 | 633 | 331 | 2 | 131 | 2063 | MPL,CDC20,ELOVL1,C1ORF84,TIE1,MED8,KIAA0467 |
| SE_01_003400351 | chr1:44706971-44743505 |
36534 | 351 | 5 | 1242 | 801 | 0 | 25 | 559 | C1ORF228,KIF2C,SNORD55,BEST4,TMEM53,SNORD46,SNORD38A,RPS8,SNORD38B |
| SE_01_003400017 | chr1:66256005-66360553 |
104548 | 17 | 11 | 2607 | 181 | 14 | 559 | 309 | PDE4B |
| SE_01_003400311 | chr1:68376027-68395215 |
19188 | 311 | 4 | 611 | 78 | 0 | 12 | 0 | RPE65,DEPDC1 |
| SE_01_003400009 | chr1:8004052-8138949 |
134897 | 9 | 18 | 3556 | 1585 | 7 | 384 | 567 | ERRFI1,PARK7 |
| SE_01_003400079 | chr1:8153668-8213243 |
59575 | 79 | 13 | 1818 | 320 | 2 | 59 | 0 | SLC45A1,ERRFI1 |
| SE_01_003400088 | chr1:84141170-84179124 |
37954 | 88 | 4 | 783 | 88 | 1 | 55 | 135 | PRKACB |
| SE_01_003400275 | chr1:8871046-8904421 |
33375 | 275 | 4 | 1013 | 212 | 0 | 21 | 554 | ENO1,CA6 |
| SE_01_003400223 | chr1:93679705-93706902 |
27197 | 223 | 4 | 656 | 241 | 1 | 112 | 350 | BCAR3 |
| SE_01_003400021 | chr1:94196195-94330902 |
134707 | 21 | 22 | 3362 | 580 | 6 | 425 | 549 | ARHGAP29 |
| SE_01_003400138 | chr10:100362230-100375677 |
13447 | 138 | 2 | 328 | 145 | 0 | 15 | 473 | NCRNA00263,SCD,PKD2L1 |
| SE_01_003400091 | chr10:104108813-104128116 |
19303 | 91 | 3 | 454 | 229 | 2 | 64 | 369 | C10ORF78,COL17A1 |
| SE_01_003400158 | chr10:110395252-110417737 |
22485 | 158 | 4 | 658 | 77 | 2 | 78 | 65 | DUSP5 |
| SE_01_003400362 | chr10:110495613-110536703 |
41090 | 362 | 6 | 1140 | 79 | 3 | 294 | 665 | DUSP5,SMC3 |
| SE_01_003400043 | chr10:112359825-112406095 |
46270 | 43 | 4 | 1285 | 397 | 5 | 111 | 465 | ACSL5,ZDHHC6,GUCY2GP,VTI1A |
| SE_01_003400007 | chr10:112471288-112565498 |
94210 | 7 | 12 | 2264 | 26 | 3 | 478 | 102 | VTI1A,ZDHHC6 |
| SE_01_003400196 | chr10:112948471-112966068 |
17597 | 196 | 3 | 464 | 45 | 1 | 325 | 485 | TCF7L2 |
| SE_01_003400281 | chr10:113067557-113094581 |
27024 | 281 | 3 | 758 | 6 | 1 | 114 | 91 | TCF7L2 |
| SE_01_003400146 | chr10:11870650-11902239 |
31589 | 146 | 7 | 1149 | 478 | 5 | 0 | 441 | C10ORF47 |
| SE_01_003400302 | chr10:22815413-22826768 |
11355 | 302 | 2 | 321 | 12 | 1 | 13 | 0 | PIP4K2A |
| SE_01_003400085 | chr10:28077078-28140461 |
63383 | 85 | 12 | 1674 | 216 | 9 | 89 | 257 | MPP7,ARMC4 |
| SE_01_003400318 | chr10:3089659-3096790 |
7131 | 318 | 2 | 339 | 67 | 3 | 5 | 0 | PFKP |
| SE_01_003400130 | chr10:31912001-31948161 |
36160 | 130 | 7 | 971 | 192 | 5 | 71 | 170 | ARHGAP12 |
| SE_01_003400212 | chr10:43394861-43421616 |
26755 | 212 | 2 | 780 | 556 | 0 | 76 | 707 | HNRNPF,FXYD4,ZNF487P |
| SE_01_003400243 | chr10:4660381-4705390 |
45009 | 243 | 6 | 1318 | 134 | 4 | 58 | 143 | LOC338588,LOC100216001 |
| SE_01_003400176 | chr10:52312555-52321352 |
8797 | 176 | 1 | 244 | 28 | 0 | 63 | 493 | DKK1 |
| SE_01_003400295 | chr10:70557904-70581023 |
23119 | 295 | 3 | 741 | 144 | 3 | 20 | 522 | KIAA1274,PRF1 |
| SE_01_003400348 | chr10:72290764-72333591 |
42827 | 348 | 6 | 1192 | 1194 | 0 | 88 | 167 | DNAJB12,DDIT4 |
| SE_01_003400193 | chr10:73883378-73911225 |
27847 | 193 | 4 | 749 | 907 | 4 | 122 | 227 | C10ORF55,PLAU,CAMK2G |
| SE_01_003400242 | chr10:80195499-80209258 |
13759 | 242 | 3 | 316 | 262 | 0 | 36 | 461 | ANXA11 |
| SE_01_003400270 | chr10:86966224-86973722 |
7498 | 270 | 1 | 238 | 246 | 0 | 3 | 953 | AGAP11,C10ORF116,MMRN2,FAM25A,SNCG |
| SE_01_003400014 | chr10:93421446-93483601 |
62155 | 14 | 7 | 1799 | 399 | 7 | 148 | 389 | MYOF,CEP55 |
| SE_01_003400102 | chr10:99775082-99786793 |
11711 | 102 | 1 | 249 | 237 | 2 | 3 | 122 | ABCC2,CUTC,COX15 |
| SE_01_003400346 | chr10:99905792-99935133 |
29341 | 346 | 4 | 772 | 763 | 0 | 40 | 537 | NCRNA00093,DNMBP |
| SE_01_003400126 | chr10:99961244-100010656 |
49412 | 126 | 7 | 1282 | 985 | 0 | 64 | 245 | DNMBP,NCRNA00093 |
| SE_01_003400155 | chr11:102597593-102609526 |
11933 | 155 | 2 | 385 | 305 | 0 | 21 | 151 | MMP20,MMP27 |
| SE_01_003400288 | chr11:10509441-10561755 |
52314 | 288 | 7 | 1435 | 686 | 6 | 112 | 896 | LOC100129827,RNF141,LYVE1,MTRNR2L8,AMPD3 |
| SE_01_003400064 | chr11:10632526-10675167 |
42641 | 64 | 5 | 1263 | 301 | 7 | 107 | 175 | MRVI1 |
| SE_01_003400029 | chr11:118906508-118939589 |
33081 | 29 | 2 | 846 | 463 | 4 | 453 | 659 | BCL9L,CXCR5,UPK2,FOXR1 |
| SE_01_003400075 | chr11:122144137-122172013 |
27876 | 75 | 1 | 749 | 4 | 3 | 149 | 125 | MIR100,MIRLET7A2,LOC399959,MIR125B1,BLID |
| SE_01_003400073 | chr11:122175761-122199038 |
23277 | 73 | 1 | 627 | 6 | 3 | 114 | 31 | LOC399959,MIR100,MIRLET7A2 |
| SE_01_003400323 | chr11:27926315-27936589 |
10274 | 323 | 2 | 232 | 33 | 0 | 33 | 0 | MIR610 |
| SE_01_003400321 | chr11:34623367-34656241 |
32874 | 321 | 5 | 908 | 103 | 6 | 209 | 381 | EHF |
| SE_01_003400218 | chr11:57771688-57783178 |
11490 | 218 | 2 | 237 | 226 | 0 | 82 | 0 | CTNND1,C11ORF31,BTBD18 |
| SE_01_003400313 | chr11:59536649-59567133 |
30484 | 313 | 8 | 834 | 442 | 1 | 3 | 536 | OR4D11,OR4D9,OSBP,MIR3162 |
| SE_01_003400099 | chr11:62538602-62575469 |
36867 | 99 | 7 | 926 | 1193 | 3 | 294 | 1049 | AHNAK,EEF1G,TUT1,ROM1,MTA2,B3GAT3,EML3 |
| SE_01_003400249 | chr11:64237849-64248678 |
10829 | 249 | 2 | 265 | 542 | 0 | 157 | 1459 | FKBP2,VEGFB,PPP1R14B,BAD,DNAJC4,PLCB3,NUDT22,FERMT3,KCNK4,GPR137,TRPT1 |
| SE_01_003400268 | chr11:64835759-64879812 |
44053 | 268 | 10 | 1379 | 606 | 0 | 288 | 2722 | CDC42BPG,EHD1,ATG2A,MEN1,MAP4K2,PPP2R5B,MIR194-2,MIR192 |
| SE_01_003400152 | chr11:65416525-65428901 |
12376 | 152 | 1 | 374 | 160 | 2 | 39 | 917 | NEAT1,FRMD8,SLC25A45,MIR612 |
| SE_01_003400038 | chr11:65471090-65509086 |
37996 | 38 | 8 | 1086 | 1741 | 4 | 50 | 963 | MALAT1,NEAT1,MIR612,SCYL1,LTBP3 |
| SE_01_003400108 | chr11:65887151-65904662 |
17511 | 108 | 1 | 458 | 874 | 3 | 187 | 1378 | FOSL1,CCDC85B,FIBP,C11ORF68,CTSW,EFEMP2,DRAP1,TSGA10IP,CFL1,MUS81 |
| SE_01_003400122 | chr11:65910619-65920665 |
10046 | 122 | 1 | 285 | 229 | 0 | 159 | 946 | C11ORF68,DRAP1,CCDC85B,CTSW,EFEMP2,SART1,TSGA10IP,FIBP,FOSL1 |
| SE_01_003400153 | chr11:67345354-67381401 |
36047 | 153 | 7 | 845 | 650 | 1 | 345 | 1509 | LOC100130987,CLCF1,POLD4,PPP1CA,RAD9A,TBC1D10C,SSH3,CARNS1,RPS6KB2 |
| SE_01_003400225 | chr11:69281083-69303350 |
22267 | 225 | 2 | 740 | 84 | 1 | 62 | 665 | MYEOV |
| SE_01_003400340 | chr11:69635819-69655581 |
19762 | 340 | 2 | 605 | 51 | 2 | 158 | 1149 | CCND1,ORAOV1,FGF19 |
| SE_01_003400261 | chr11:9357149-9365474 |
8325 | 261 | 2 | 246 | 210 | 0 | 0 | 0 | IPO7,TMEM41B |
| SE_01_003400324 | chr12:104217988-104221519 |
3531 | 324 | 1 | 85 | 31 | 0 | 1 | 0 | TXNRD1 |
| SE_01_003400283 | chr12:104271591-104300544 |
28953 | 283 | 5 | 736 | 281 | 1 | 24 | 271 | TXNRD1,EID3 |
| SE_01_003400111 | chr12:108823205-108857652 |
34447 | 111 | 7 | 936 | 300 | 2 | 49 | 323 | SSH1,DAO |
| SE_01_003400042 | chr12:116491341-116540513 |
49172 | 42 | 6 | 1428 | 319 | 1 | 66 | 566 | NCRNA00173,MAP1LC3B2 |
| SE_01_003400244 | chr12:120227951-120263643 |
35692 | 244 | 5 | 905 | 343 | 0 | 108 | 119 | PXN,GCN1L1,SIRT4,RPLP0 |
| SE_01_003400229 | chr12:121791328-121804270 |
12942 | 229 | 1 | 358 | 282 | 0 | 155 | 1485 | LOC338799,RHOF,SETD1B |
| SE_01_003400296 | chr12:122880820-122898859 |
18039 | 296 | 4 | 463 | 203 | 0 | 46 | 142 | VPS37B,HIP1R |
| SE_01_003400065 | chr12:124904344-124941668 |
37324 | 65 | 6 | 1288 | 120 | 4 | 71 | 1108 | UBC,SCARB1,DHX37 |
| SE_01_003400245 | chr12:12716286-12727310 |
11024 | 245 | 1 | 322 | 64 | 2 | 154 | 598 | APOLD1,CDKN1B,MIR613,GPR19 |
| SE_01_003400082 | chr12:12869559-12904950 |
35391 | 82 | 8 | 1071 | 114 | 2 | 54 | 383 | RPL13AP20,GPRC5A,GPRC5D,MIR614 |
| SE_01_003400357 | chr12:15682282-15733315 |
51033 | 357 | 9 | 1181 | 109 | 1 | 87 | 69 | EPS8 |
| SE_01_003400353 | chr12:31730737-31764263 |
33526 | 353 | 5 | 912 | 311 | 0 | 0 | 0 | AMN1,H3F3C |
| SE_01_003400312 | chr12:46357036-46387297 |
30261 | 312 | 6 | 789 | 209 | 0 | 175 | 822 | SLC38A2 |
| SE_01_003400076 | chr12:46429289-46475513 |
46224 | 76 | 6 | 1138 | 590 | 1 | 103 | 0 | SLC38A2 |
| SE_01_003400188 | chr12:46547212-46558643 |
11431 | 188 | 1 | 255 | 59 | 2 | 27 | 0 | SLC38A2 |
| SE_01_003400149 | chr12:50200946-50225364 |
24418 | 149 | 3 | 549 | 1198 | 1 | 71 | 262 | LIMA1,LASS5,MIR1293 |
| SE_01_003400101 | chr12:52143227-52164893 |
21666 | 101 | 3 | 691 | 102 | 0 | 31 | 0 | KRT80,LOC283404 |
| SE_01_003400163 | chr12:52923526-52928746 |
5220 | 163 | 1 | 157 | 36 | 1 | 25 | 88 | KRT8,KRT18 |
| SE_01_003400150 | chr12:53344645-53388799 |
44154 | 150 | 6 | 1121 | 673 | 0 | 228 | 616 | SP1,SP7,PFDN5,AAAS,AMHR2,C12ORF10 |
| SE_01_003400109 | chr12:6362167-6378325 |
16158 | 109 | 2 | 472 | 108 | 1 | 57 | 793 | SCNN1A,TNFRSF1A,PLEKHG6,LTBR |
| SE_01_003400232 | chr12:6530549-6541443 |
10894 | 232 | 1 | 425 | 377 | 0 | 110 | 1384 | GAPDH,NCAPD2,IFFO1,MRPL51,NOP2,SCARNA11,SCARNA10 |
| SE_01_003400018 | chr12:65425058-65540706 |
115648 | 18 | 17 | 3103 | 291 | 14 | 173 | 445 | MSRB3 |
| SE_01_003400365 | chr12:65601733-65610668 |
8935 | 365 | 1 | 199 | 29 | 1 | 74 | 0 | HMGA2 |
| SE_01_003400044 | chr12:65629462-65673946 |
44484 | 44 | 6 | 1236 | 162 | 0 | 148 | 0 | HMGA2 |
| SE_01_003400338 | chr12:65718653-65730796 |
12143 | 338 | 2 | 326 | 4 | 3 | 27 | 0 | HMGA2 |
| SE_01_003400023 | chr12:65817155-65910391 |
93236 | 23 | 17 | 2263 | 80 | 11 | 388 | 1490 | HMGA2,RPSAP52 |
| SE_01_003400356 | chr12:65926286-65953333 |
27047 | 356 | 3 | 621 | 27 | 6 | 85 | 153 | HMGA2,RPSAP52 |
| SE_01_003400171 | chr12:6960400-6972503 |
12103 | 171 | 1 | 383 | 122 | 3 | 113 | 1324 | PTPN6,PHB2,SCARNA12,MIR141,EMG1,MIR200C,C12ORF57,ATN1,LPCAT3,ENO2 |
| SE_01_003400032 | chr12:75621938-75669562 |
47624 | 32 | 7 | 1315 | 742 | 4 | 133 | 0 | KRR1 |
| SE_01_003400016 | chr12:75693830-75798529 |
104699 | 16 | 21 | 2952 | 214 | 7 | 203 | 0 | KRR1 |
| SE_01_003400118 | chr12:75850082-75914379 |
64297 | 118 | 12 | 1829 | 54 | 6 | 132 | 0 | PHLDA1 |
| SE_01_003400059 | chr12:75932016-75997498 |
65482 | 59 | 10 | 1719 | 214 | 8 | 187 | 0 | PHLDA1 |
| SE_01_003400113 | chr12:76017250-76038783 |
21533 | 113 | 4 | 554 | 50 | 1 | 99 | 792 | PHLDA1,NAP1L1 |
| SE_01_003400347 | chr12:88498547-88581420 |
82873 | 347 | 15 | 1925 | 329 | 19 | 291 | 394 | KITLG |
| SE_01_003400020 | chr12:88917133-88971952 |
54819 | 20 | 8 | 1231 | 50 | 5 | 179 | 0 | KITLG |
| SE_01_003400335 | chr12:95168926-95206792 |
37866 | 335 | 5 | 880 | 463 | 3 | 47 | 46 | FGD6,VEZT |
| SE_01_003400178 | chr13:109242269-109275588 |
33319 | 178 | 8 | 1051 | 359 | 5 | 60 | 0 | IRS2 |
| SE_01_003400182 | chr13:110943464-110974082 |
30618 | 182 | 6 | 1091 | 200 | 10 | 13 | 0 | ANKRD10 |
| SE_01_003400234 | chr13:44300476-44315295 |
14819 | 234 | 3 | 388 | 73 | 6 | 63 | 0 | SERP2,TSC22D1 |
| SE_01_003400181 | chr13:97252665-97280455 |
27790 | 181 | 4 | 703 | 46 | 3 | 97 | 73 | MBNL2 |
| SE_01_003400287 | chr14:104665080-104691097 |
26017 | 287 | 3 | 834 | 193 | 1 | 20 | 284 | INF2,ADSSL1 |
| SE_01_003400345 | chr14:49861190-49912765 |
51575 | 345 | 8 | 1287 | 302 | 1 | 148 | 676 | ARF6,SDCCAG1 |
| SE_01_003400154 | chr14:49998849-50014776 |
15927 | 154 | 2 | 442 | 149 | 1 | 39 | 698 | C14ORF182 |
| SE_01_003400263 | chr14:55101763-55109300 |
7537 | 263 | 2 | 159 | 101 | 2 | 9 | 0 | LGALS3 |
| SE_01_003400112 | chr14:68778461-68798197 |
19736 | 112 | 2 | 599 | 73 | 6 | 276 | 1034 | C14ORF181,ZFP36L1 |
| SE_01_003400299 | chr14:76946458-76963085 |
16627 | 299 | 2 | 434 | 133 | 0 | 91 | 0 | C14ORF4 |
| SE_01_003400070 | chr15:100710137-100734523 |
24386 | 70 | 4 | 865 | 67 | 2 | 53 | 0 | ASB7 |
| SE_01_003400187 | chr15:59267887-59306443 |
38556 | 187 | 6 | 1304 | 91 | 2 | 78 | 51 | MYO1E,LDHAL6B |
| SE_01_003400054 | chr15:60361143-60400790 |
39647 | 54 | 5 | 1074 | 316 | 6 | 131 | 442 | ANXA2 |
| SE_01_003400098 | chr15:67090300-67128665 |
38365 | 98 | 4 | 1095 | 140 | 7 | 128 | 80 | SMAD3 |
| SE_01_003400366 | chr15:71293438-71297490 |
4052 | 366 | 1 | 114 | 10 | 0 | 29 | 0 | THSD4 |
| SE_01_003400352 | chr15:75449948-75456743 |
6795 | 352 | 1 | 125 | 92 | 0 | 134 | 359 | SIN3A |
| SE_01_003400286 | chr15:92800380-92833206 |
32826 | 286 | 6 | 1016 | 67 | 0 | 47 | 0 | LOC100507217,ASB9P1 |
| SE_01_003400303 | chr15:92898375-92908077 |
9702 | 303 | 1 | 248 | 24 | 0 | 132 | 330 | LOC100507217,CHD2,MIR3175 |
| SE_01_003400228 | chr16:2148417-2157450 |
9033 | 228 | 1 | 309 | 94 | 0 | 65 | 1076 | TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1 |
| SE_01_003400259 | chr16:30188353-30209785 |
21432 | 259 | 7 | 53 | 27 | 0 | 96 | 2452 | SLX1B,LOC606724,SULT1A4,SULT1A3,CORO1A,BOLA2B,SLX1A-SULT1A3,LOC388242,LOC613037 |
| SE_01_003400131 | chr16:3019640-3024831 |
5191 | 131 | 1 | 162 | 55 | 0 | 95 | 1099 | HCFC1R1,THOC6,TNFRSF12A,IL32,CLDN9,LOC283875,CCDC64B,PKMYT1,MMP25,CLDN6 |
| SE_01_003400173 | chr16:69039452-69079086 |
39634 | 173 | 7 | 891 | 498 | 2 | 44 | 51 | TMCO7,HAS3 |
| SE_01_003400053 | chr16:69391608-69478488 |
86880 | 53 | 19 | 2138 | 1165 | 3 | 195 | 848 | CYB5B,TMED6,TERF2 |
| SE_01_003400280 | chr16:69512746-69533858 |
21112 | 280 | 3 | 557 | 783 | 6 | 70 | 0 | NFAT5,MIR1538 |
| SE_01_003400349 | chr16:89556866-89566735 |
9869 | 349 | 1 | 457 | 452 | 2 | 45 | 1280 | RPL13,SNORD68,SPG7,DPEP1,CPNE7 |
| SE_01_003400127 | chr16:89993234-89997434 |
4200 | 127 | 1 | 196 | 386 | 0 | 9 | 386 | AFG3L1P,DBNDD1,DEF8,C16ORF3,CENPBD1,GAS8 |
| SE_01_003400137 | chr17:15944864-15967327 |
22463 | 137 | 5 | 710 | 491 | 0 | 37 | 228 | ADORA2B,TTC19,ZSWIM7 |
| SE_01_003400206 | chr17:16860146-16867653 |
7507 | 206 | 2 | 238 | 157 | 2 | 0 | 0 | KRT16P2,MPRIP |
| SE_01_003400135 | chr17:17008030-17045510 |
37480 | 135 | 6 | 1044 | 681 | 1 | 118 | 148 | MPRIP,TNFRSF13B |
| SE_01_003400139 | chr17:17811315-17850597 |
39282 | 139 | 5 | 1058 | 808 | 8 | 197 | 3490 | MIR33B,SREBF1,TOM1L2,RAI1,SMCR5 |
| SE_01_003400160 | chr17:2391771-2408508 |
16737 | 160 | 2 | 488 | 251 | 1 | 226 | 719 | MNT,LOC284009 |
| SE_01_003400222 | chr17:28718622-28729953 |
11331 | 222 | 1 | 314 | 210 | 0 | 122 | 1125 | SNORD42B,TLCD1,RPL23A,SNORD4A,NEK8,SNORD42A,SNORD4B,RAB34,PROCA1,TRAF4 |
| SE_01_003400297 | chr17:28806408-28813947 |
7539 | 297 | 1 | 176 | 57 | 2 | 0 | 144 | C17ORF63,MIR144,ERAL1,MIR451 |
| SE_01_003400310 | chr17:38275420-38287684 |
12264 | 310 | 2 | 307 | 188 | 1 | 34 | 0 | LOC440434,MRPL45 |
| SE_01_003400175 | chr17:40900935-40923415 |
22480 | 175 | 3 | 615 | 475 | 1 | 52 | 79 | KRT23,KRT39,KRT12,KRT20 |
| SE_01_003400123 | chr17:40946575-40960332 |
13757 | 123 | 1 | 396 | 265 | 1 | 75 | 130 | KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23 |
| SE_01_003400145 | chr17:41518682-41531370 |
12688 | 145 | 1 | 405 | 95 | 2 | 99 | 992 | KRT15,KRT19,KRT35,KRT36,KRT9,KRT13 |
| SE_01_003400208 | chr17:41771631-41801937 |
30306 | 208 | 6 | 839 | 693 | 2 | 175 | 420 | JUP,FKBP10,HAP1,LEPREL4,NT5C3L,KLHL10 |
| SE_01_003400200 | chr17:44812612-44833413 |
20801 | 200 | 5 | 551 | 520 | 0 | 4 | 285 | GJC1,HIGD1B |
| SE_01_003400298 | chr17:47501527-47513660 |
12133 | 298 | 2 | 254 | 476 | 0 | 41 | 0 | MRPL45P2,NPEPPS |
| SE_01_003400205 | chr17:48235280-48266507 |
31227 | 205 | 5 | 604 | 1213 | 7 | 346 | 0 | SKAP1,MIR1203 |
| SE_01_003400262 | chr17:48470242-48491285 |
21043 | 262 | 3 | 528 | 913 | 2 | 76 | 0 | HOXB1,SKAP1 |
| SE_01_003400078 | chr17:50049424-50067710 |
18286 | 78 | 1 | 476 | 173 | 5 | 147 | 1094 | ITGA3,PDK2 |
| SE_01_003400307 | chr17:51119174-51125216 |
6042 | 307 | 2 | 140 | 56 | 0 | 64 | 270 | SPAG9,NME1-NME2,NME2,NME1 |
| SE_01_003400050 | chr17:57860278-57956961 |
96683 | 50 | 14 | 2612 | 375 | 10 | 419 | 1905 | CUEDC1,MRPS23,VEZF1 |
| SE_01_003400273 | chr17:57985177-58008612 |
23435 | 273 | 3 | 593 | 126 | 0 | 328 | 1572 | SRSF1,VEZF1 |
| SE_01_003400040 | chr17:59748915-59791380 |
42465 | 40 | 8 | 880 | 733 | 3 | 81 | 71 | TMEM49,PTRH2,MIR21 |
| SE_01_003400013 | chr17:59825125-59853939 |
28814 | 13 | 3 | 632 | 403 | 1 | 117 | 260 | MIR21,TMEM49,RPS6KB1,TUBD1 |
| SE_01_003400028 | chr17:64622382-64733751 |
111369 | 28 | 24 | 2780 | 786 | 4 | 218 | 265 | SMURF2,LOC146880 |
| SE_01_003400210 | chr17:67417891-67442354 |
24463 | 210 | 3 | 679 | 54 | 0 | 49 | 0 | PITPNC1 |
| SE_01_003400201 | chr17:72370586-72424087 |
53501 | 201 | 10 | 1479 | 100 | 7 | 256 | 287 | LOC100499467 |
| SE_01_003400220 | chr17:73290410-73312871 |
22461 | 220 | 3 | 671 | 93 | 2 | 58 | 231 | CDC42EP4,CPSF4L |
| SE_01_003400141 | chr17:75077184-75097091 |
19907 | 141 | 3 | 567 | 748 | 1 | 31 | 566 | SLC16A5,KCTD2,ARMC7,NT5C,ATP5H |
| SE_01_003400278 | chr17:75113631-75136145 |
22514 | 278 | 6 | 696 | 574 | 1 | 54 | 1054 | ARMC7,HN1,NT5C,SLC16A5,SUMO2 |
| SE_01_003400140 | chr17:75674396-75724101 |
49705 | 140 | 7 | 1314 | 364 | 9 | 116 | 1313 | SAP30BP,ITGB4,GALK1,RECQL5,LOC643008,LOC100130933 |
| SE_01_003400344 | chr17:75775037-75786751 |
11714 | 344 | 3 | 411 | 207 | 0 | 134 | 642 | UNK,H3F3B,GALK1 |
| SE_01_003400215 | chr17:75869194-75890396 |
21202 | 215 | 3 | 577 | 773 | 5 | 130 | 1222 | TRIM47,TRIM65,UNC13D,WBP2,MRPL38 |
| SE_01_003400071 | chr17:77279245-77334123 |
54878 | 71 | 6 | 1728 | 100 | 5 | 116 | 682 | SEPT9,9-SEP |
| SE_01_003400185 | chr17:78300586-78354597 |
54011 | 185 | 8 | 1714 | 57 | 3 | 207 | 0 | PGS1,SOCS3 |
| SE_01_003400246 | chr17:81036637-81066114 |
29477 | 246 | 7 | 1284 | 371 | 2 | 83 | 276 | BAIAP2,CHMP6,FLJ90757 |
| SE_01_003400240 | chr17:81364896-81401074 |
36178 | 240 | 4 | 1193 | 320 | 0 | 266 | 776 | BAHCC1,TMEM105,MIR3186 |
| SE_01_003400277 | chr17:8150127-8164661 |
14534 | 277 | 1 | 424 | 212 | 0 | 318 | 1244 | PER1,VAMP2,HES7,ALOXE3,MIR3676,AURKB,C17ORF59,TMEM107 |
| SE_01_003400216 | chr17:81507468-81520607 |
13139 | 216 | 2 | 631 | 413 | 1 | 116 | 635 | ACTG1,FSCN2,C17ORF70 |
| SE_01_003400191 | chr17:81857354-81874465 |
17111 | 191 | 5 | 582 | 225 | 0 | 94 | 1359 | P4HB,ARHGDIA,MAFG,THOC4,PCYT2,NPB,ANAPC11,SIRT7,FAM195B,DYSFIP1 |
| SE_01_003400121 | chr17:82204460-82248552 |
44092 | 121 | 7 | 1576 | 1417 | 2 | 99 | 2481 | SLC16A3,CCDC57,CSNK1D |
| SE_01_003400331 | chr17:927275-938985 |
11710 | 331 | 4 | 505 | 109 | 4 | 35 | 0 | NXN |
| SE_01_003400354 | chr18:26477017-26488228 |
11211 | 354 | 2 | 260 | 7 | 1 | 16 | 0 | KCTD1 |
| SE_01_003400336 | chr18:3445989-3463372 |
17383 | 336 | 3 | 449 | 22 | 1 | 195 | 979 | TGIF1 |
| SE_01_003400012 | chr18:3592307-3631143 |
38836 | 12 | 6 | 1039 | 162 | 5 | 81 | 771 | FLJ35776,DLGAP1 |
| SE_01_003400105 | chr18:3648009-3671762 |
23753 | 105 | 4 | 701 | 78 | 5 | 42 | 26 | DLGAP1,FLJ35776 |
| SE_01_003400358 | chr18:70279090-70312084 |
32994 | 358 | 4 | 921 | 135 | 2 | 31 | 194 | SOCS6 |
| SE_01_003400068 | chr18:70355851-70386239 |
30388 | 68 | 6 | 926 | 100 | 5 | 25 | 0 | SOCS6 |
| SE_01_003400332 | chr19:11084805-11096026 |
11221 | 332 | 2 | 316 | 53 | 8 | 6 | 318 | LDLR |
| SE_01_003400290 | chr19:1165389-1190398 |
25009 | 290 | 6 | 908 | 190 | 0 | 48 | 158 | SBNO2,STK11,C19ORF26 |
| SE_01_003400255 | chr19:1243168-1256297 |
13129 | 255 | 1 | 544 | 58 | 1 | 176 | 1429 | ATP5D,MIDN,CIRBP,C19ORF23,STK11,C19ORF26,EFNA2,C19ORF24 |
| SE_01_003400184 | chr19:12765645-12797108 |
31463 | 184 | 5 | 756 | 357 | 1 | 391 | 1927 | JUNB,HOOK2,PRDX2,ASNA1,RNASEH2A,RTBDN,TNPO2,C19ORF43,MAST1,BEST2 |
| SE_01_003400069 | chr19:13140445-13173438 |
32993 | 69 | 7 | 855 | 196 | 2 | 118 | 1502 | STX10,NACC1,IER2,TRMT1,LYL1 |
| SE_01_003400267 | chr19:13837886-13845696 |
7810 | 267 | 1 | 238 | 119 | 1 | 105 | 0 | MIR181C,ZSWIM4,MIR27A,MIR24-2,MIR23A,MIR181D,NANOS3,LOC284454 |
| SE_01_003400177 | chr19:13845749-13855918 |
10169 | 177 | 1 | 265 | 66 | 0 | 69 | 0 | MIR181C,MIR23A,MIR27A,MIR24-2,MIR181D,NANOS3,LOC284454 |
| SE_01_003400090 | chr19:15823951-15839826 |
15875 | 90 | 1 | 512 | 959 | 0 | 0 | 522 | UCA1,OR10H1,OR10H5,CYP4F24P |
| SE_01_003400253 | chr19:1744701-1774188 |
29487 | 253 | 4 | 933 | 31 | 2 | 104 | 424 | ONECUT3,LOC100288123,MIR1909,ATP8B3 |
| SE_01_003400231 | chr19:18278486-18307939 |
29453 | 231 | 5 | 856 | 479 | 3 | 113 | 1042 | MIR3188,JUND,LSM4,PDE4C,LOC729966,KIAA1683,PGPEP1 |
| SE_01_003400257 | chr19:2028328-2062768 |
34440 | 257 | 8 | 1211 | 127 | 2 | 115 | 2093 | MKNK2,MOBKL2A,BTBD2,IZUMO4 |
| SE_01_003400300 | chr19:2494391-2544598 |
50207 | 300 | 9 | 1780 | 197 | 2 | 24 | 1041 | GNG7,GADD45B,LMNB2 |
| SE_01_003400320 | chr19:36127291-36142228 |
14937 | 320 | 4 | 420 | 222 | 1 | 28 | 351 | CAPNS1,POLR2I,TBCB,COX7A1 |
| SE_01_003400041 | chr19:38635896-38695771 |
59875 | 41 | 10 | 1688 | 1409 | 4 | 230 | 274 | ACTN4,EIF3K,CAPN12,MAP4K1 |
| SE_01_003400087 | chr19:39396906-39413298 |
16392 | 87 | 2 | 397 | 126 | 0 | 214 | 1467 | ZFP36,PLEKHG2,MED29,SUPT5H,RPS16,PAF1 |
| SE_01_003400241 | chr19:40587910-40626129 |
38219 | 241 | 7 | 1022 | 390 | 1 | 383 | 3843 | LTBP4,SHKBP1 |
| SE_01_003400289 | chr19:40714230-40720072 |
5842 | 289 | 1 | 181 | 103 | 1 | 86 | 749 | ITPKC,ADCK4,C19ORF54,SNRPA,NUMBL |
| SE_01_003400317 | chr19:42241543-42284401 |
42858 | 317 | 6 | 993 | 529 | 2 | 926 | 1490 | GSK3A,ERF,CIC,MEGF8,PAFAH1B3,PRR19,TMEM145,DEDD2,ZNF526 |
| SE_01_003400058 | chr19:43738628-43786116 |
47488 | 58 | 7 | 1362 | 1321 | 6 | 195 | 1760 | C19ORF61,KCNN4,ZNF283,LYPD5,IRGC |
| SE_01_003400269 | chr19:46840570-46926438 |
85868 | 269 | 9 | 2218 | 231 | 0 | 282 | 722 | GRLF1,AP2S1,SNAR-E |
| SE_01_003400350 | chr19:48632225-48639518 |
7293 | 350 | 1 | 156 | 127 | 1 | 158 | 1313 | CA11,SEC1,DBP,RPL18,SPHK2,FAM83E,NTN5,SPACA4 |
| SE_01_003400254 | chr19:49486790-49498291 |
11501 | 254 | 1 | 449 | 381 | 3 | 57 | 1033 | RPL13AP5,RPS11,SNORD34,SNORD35A,SNORD33,RPL13A,SNORD32A,SNORD35B,ALDH16A1,FCGRT,SLC17A7,RCN3,PIH1D1,FLT3LG,MIR150 |
| SE_01_003400094 | chr2:110096957-110117104 |
20147 | 94 | 3 | 530 | 253 | 1 | 35 | 288 | MALL,MIR4267 |
| SE_01_003400316 | chr2:111482884-111497897 |
15013 | 316 | 2 | 317 | 57 | 0 | 29 | 237 | LOC541471 |
| SE_01_003400168 | chr2:156331766-156345626 |
13860 | 168 | 2 | 272 | 18 | 1 | 258 | 534 | NR4A2 |
| SE_01_003400062 | chr2:168182869-168226403 |
43534 | 62 | 6 | 1227 | 137 | 8 | 128 | 0 | STK39 |
| SE_01_003400227 | chr2:177240548-177266150 |
25602 | 227 | 3 | 633 | 183 | 0 | 60 | 478 | NFE2L2,MIR3128,HNRNPA3 |
| SE_01_003400030 | chr2:181776022-181821589 |
45567 | 30 | 6 | 1237 | 16 | 0 | 129 | 0 | SSFA2 |
| SE_01_003400046 | chr2:181874581-181959880 |
85299 | 46 | 12 | 2028 | 93 | 4 | 306 | 1208 | SSFA2,PPP1R1C |
| SE_01_003400333 | chr2:188290598-188314925 |
24327 | 333 | 4 | 638 | 220 | 2 | 0 | 437 | GULP1,MIR561 |
| SE_01_003400266 | chr2:201146456-201158749 |
12293 | 266 | 3 | 308 | 833 | 1 | 19 | 393 | CFLAR,CASP10 |
| SE_01_003400057 | chr2:219684013-219729898 |
45885 | 57 | 8 | 1240 | 298 | 12 | 130 | 0 | SLC4A3 |
| SE_01_003400117 | chr2:223522525-223578084 |
55559 | 117 | 7 | 1483 | 17 | 3 | 156 | 0 | SCG2 |
| SE_01_003400186 | chr2:223695588-223702557 |
6969 | 186 | 2 | 211 | 17 | 2 | 22 | 0 | SCG2 |
| SE_01_003400202 | chr2:226029691-226080927 |
51236 | 202 | 8 | 1407 | 39 | 5 | 99 | 0 | KIAA1486,IRS1 |
| SE_01_003400011 | chr2:226113215-226217161 |
103946 | 11 | 11 | 2724 | 360 | 12 | 284 | 329 | IRS1 |
| SE_01_003400037 | chr2:226637160-226675282 |
38122 | 37 | 5 | 1114 | 22 | 0 | 126 | 48 | IRS1 |
| SE_01_003400132 | chr2:226754116-226803001 |
48885 | 132 | 7 | 1245 | 141 | 6 | 358 | 911 | IRS1,RHBDD1 |
| SE_01_003400326 | chr2:230773133-230795491 |
22358 | 326 | 2 | 585 | 54 | 1 | 48 | 96 | CAB39 |
| SE_01_003400036 | chr2:231603854-231682183 |
78329 | 36 | 10 | 2239 | 470 | 4 | 158 | 0 | C2ORF57,PTMA,MIR1244-2 |
| SE_01_003400161 | chr2:231701513-231715801 |
14288 | 161 | 3 | 535 | 104 | 2 | 177 | 1070 | MIR1244-1,PTMA,MIR1244-2 |
| SE_01_003400170 | chr2:239245549-239281064 |
35515 | 170 | 6 | 1154 | 102 | 7 | 70 | 0 | HDAC4,MIR4269 |
| SE_01_003400224 | chr2:62568346-62580609 |
12263 | 224 | 2 | 342 | 114 | 1 | 2 | 0 | TMEM17 |
| SE_01_003400319 | chr2:64830165-64841338 |
11173 | 319 | 2 | 287 | 38 | 2 | 19 | 0 | LOC400958,SERTAD2 |
| SE_01_003400247 | chr2:70070146-70090710 |
20564 | 247 | 3 | 651 | 284 | 0 | 133 | 800 | LOC400960,PCBP1,LOC100133985 |
| SE_01_003400067 | chr2:84904759-84975958 |
71199 | 67 | 10 | 1813 | 276 | 2 | 85 | 587 | TMSB10,KCMF1,C2ORF89 |
| SE_01_003400309 | chr2:87452629-87467319 |
14690 | 309 | 2 | 331 | 127 | 0 | 33 | 82 | NCRNA00152 |
| SE_01_003400279 | chr20:17556463-17571145 |
14682 | 279 | 2 | 409 | 59 | 1 | 61 | 487 | DSTN,BFSP1 |
| SE_01_003400104 | chr20:31543965-31574918 |
30953 | 104 | 6 | 847 | 815 | 3 | 123 | 1338 | HM13,PSIMCT-1,ID1,MIR3193 |
| SE_01_003400072 | chr20:31590764-31612470 |
21706 | 72 | 7 | 694 | 852 | 4 | 157 | 400 | ID1,MIR3193,PSIMCT-1,COX4I2 |
| SE_01_003400049 | chr20:31661384-31741121 |
79737 | 49 | 17 | 1773 | 1335 | 9 | 359 | 1052 | TPX2,BCL2L1,COX4I2 |
| SE_01_003400207 | chr20:35303997-35328183 |
24186 | 207 | 4 | 576 | 1360 | 19 | 0 | 546 | UQCC,EIF6,FAM83C |
| SE_01_003400096 | chr20:3788200-3821842 |
33642 | 96 | 5 | 967 | 549 | 3 | 124 | 2245 | CDC25B,C20ORF29,C20ORF27,SPEF1,MAVS,CENPB |
| SE_01_003400301 | chr20:41001350-41010382 |
9032 | 301 | 2 | 210 | 55 | 0 | 43 | 64 | TOP1 |
| SE_01_003400327 | chr20:47314874-47332800 |
17926 | 327 | 2 | 490 | 14 | 0 | 29 | 420 | ZMYND8,LOC100131496 |
| SE_01_003400308 | chr20:50534302-50543202 |
8900 | 308 | 2 | 211 | 49 | 0 | 1 | 0 | PTPN1,MIR645 |
| SE_01_003400162 | chr20:50723964-50747396 |
23432 | 162 | 4 | 619 | 76 | 1 | 110 | 236 | PARD6B,BCAS4 |
| SE_01_003400343 | chr20:51737042-51768402 |
31360 | 343 | 6 | 1004 | 175 | 1 | 0 | 82 | ATP9A,SALL4 |
| SE_01_003400258 | chr20:53609393-53624832 |
15439 | 258 | 2 | 388 | 4 | 0 | 40 | 0 | ZNF217 |
| SE_01_003400022 | chr20:54121414-54178064 |
56650 | 22 | 9 | 1714 | 162 | 10 | 99 | 880 | CYP24A1,PFDN4 |
| SE_01_003400342 | chr20:62349087-62367433 |
18346 | 342 | 4 | 721 | 415 | 0 | 113 | 750 | LAMA5,RPS21,ADRM1,CABLES2 |
| SE_01_003400048 | chr20:62703117-62744395 |
41278 | 48 | 7 | 1452 | 325 | 7 | 73 | 354 | NTSR1,LOC100127888 |
| SE_01_003400251 | chr22:24199740-24210380 |
10640 | 251 | 2 | 291 | 129 | 0 | 0 | 0 | POM121L9P,GGT5,SUSD2,SPECC1L |
| SE_01_003400033 | chr22:30195073-30259121 |
64048 | 33 | 8 | 1777 | 1047 | 15 | 399 | 1238 | LIF,OSM,GATSL3 |
| SE_01_003400271 | chr22:30408214-30445628 |
37414 | 271 | 4 | 956 | 965 | 0 | 91 | 1624 | SEC14L2,MTFP1,RNF215,SEC14L3,SDC4P |
| SE_01_003400209 | chr22:37186091-37200452 |
14361 | 209 | 2 | 454 | 249 | 4 | 35 | 861 | C1QTNF6,IL2RB,SSTR3,RAC2 |
| SE_01_003400097 | chr22:37303688-37332922 |
29234 | 97 | 5 | 897 | 127 | 4 | 73 | 1250 | CYTH4 |
| SE_01_003400265 | chr22:37744212-37754332 |
10120 | 265 | 1 | 294 | 281 | 1 | 53 | 300 | TRIOBP |
| SE_01_003400066 | chr22:46064632-46087656 |
23024 | 66 | 1 | 664 | 48 | 1 | 167 | 131 | LOC400931,C22ORF26,MIRLET7A3,MIR3619,LOC100271722,LOC150381,MIRLET7B |
| SE_01_003400355 | chr3:110566451-110585363 |
18912 | 355 | 5 | 524 | 88 | 0 | 23 | 0 | PVRL3 |
| SE_01_003400250 | chr3:111579761-111612070 |
32309 | 250 | 7 | 853 | 56 | 2 | 94 | 526 | ZBED2,CD96 |
| SE_01_003400027 | chr3:111889375-111988954 |
99579 | 27 | 13 | 2571 | 818 | 23 | 305 | 1478 | PHLDB2,ABHD10,TAGLN3 |
| SE_01_003400128 | chr3:114627531-114660858 |
33327 | 128 | 6 | 749 | 17 | 5 | 261 | 0 | ZBTB20 |
| SE_01_003400045 | chr3:139297927-139327426 |
29499 | 45 | 4 | 825 | 260 | 8 | 0 | 0 | MRPS22 |
| SE_01_003400133 | chr3:149572505-149588063 |
15558 | 133 | 3 | 398 | 19 | 2 | 38 | 65 | WWTR1 |
| SE_01_003400089 | chr3:156811093-156828419 |
17326 | 89 | 2 | 433 | 343 | 4 | 92 | 490 | LEKR1,PA2G4P4 |
| SE_01_003400235 | chr3:32417559-32423014 |
5455 | 235 | 1 | 134 | 53 | 0 | 9 | 0 | CMTM7 |
| SE_01_003400147 | chr3:45091718-45141908 |
50190 | 147 | 8 | 1373 | 309 | 7 | 85 | 518 | CDCP1 |
| SE_01_003400361 | chr3:4977024-4996602 |
19578 | 361 | 4 | 541 | 24 | 4 | 276 | 671 | BHLHE40 |
| SE_01_003400322 | chr3:98511502-98524091 |
12589 | 322 | 1 | 299 | 58 | 1 | 61 | 537 | CLDND1,OR5K1,OR5K2,GPR15 |
| SE_01_003400328 | chr3:98535689-98547097 |
11408 | 328 | 1 | 297 | 101 | 0 | 22 | 0 | OR5K2,GPR15,CLDND1,CPOX |
| SE_01_003400114 | chr3:98550971-98559446 |
8475 | 114 | 1 | 220 | 64 | 1 | 36 | 0 | GPR15,CLDND1,CPOX |
| SE_01_003400107 | chr3:98823112-98924217 |
101105 | 107 | 16 | 2701 | 1075 | 1 | 120 | 375 | DCBLD2 |
| SE_01_003400035 | chr3:98951649-98986723 |
35074 | 35 | 5 | 853 | 443 | 0 | 82 | 0 | DCBLD2 |
| SE_01_003400034 | chr4:101101384-101184792 |
83408 | 34 | 11 | 2101 | 218 | 8 | 197 | 31 | PPP3CA |
| SE_01_003400051 | chr4:11488097-11551247 |
63150 | 51 | 8 | 2087 | 348 | 14 | 147 | 0 | HS3ST1 |
| SE_01_003400024 | chr4:11602386-11653714 |
51328 | 24 | 8 | 1591 | 125 | 3 | 138 | 0 | HS3ST1 |
| SE_01_003400195 | chr4:11696131-11725576 |
29445 | 195 | 4 | 856 | 127 | 1 | 39 | 0 | HS3ST1 |
| SE_01_003400019 | chr4:168477305-168605751 |
128446 | 19 | 17 | 3492 | 413 | 18 | 94 | 327 | PALLD,DDX60L |
| SE_01_003400077 | chr4:186804487-186847911 |
43424 | 77 | 7 | 1091 | 375 | 2 | 136 | 0 | FAT1 |
| SE_01_003400183 | chr4:186926605-186938094 |
11489 | 183 | 2 | 423 | 48 | 1 | 59 | 0 | FAT1 |
| SE_01_003400001 | chr4:30713977-30975605 |
261628 | 1 | 31 | 7214 | 451 | 14 | 1527 | 917 | PCDH7 |
| SE_01_003400039 | chr4:31011876-31108505 |
96629 | 39 | 16 | 2847 | 6 | 7 | 380 | 0 | PCDH7 |
| SE_01_003400074 | chr4:74361206-74419273 |
58067 | 74 | 8 | 1659 | 298 | 10 | 155 | 670 | EREG,AREG |
| SE_01_003400285 | chr4:74531741-74560466 |
28725 | 285 | 6 | 851 | 139 | 8 | 90 | 0 | AREG |
| SE_01_003400015 | chr4:74608364-74683859 |
75495 | 15 | 5 | 2215 | 101 | 7 | 86 | 0 | BTC |
| SE_01_003400081 | chr4:78529603-78570433 |
40830 | 81 | 5 | 1157 | 576 | 1 | 87 | 763 | FRAS1,ANXA3 |
| SE_01_003400100 | chr5:115895295-115941916 |
46621 | 100 | 10 | 1429 | 280 | 5 | 178 | 108 | AP3S1,AQPEP |
| SE_01_003400330 | chr5:134502811-134528186 |
25375 | 330 | 4 | 597 | 200 | 5 | 316 | 814 | PHF15 |
| SE_01_003400119 | chr5:142324334-142368356 |
44022 | 119 | 5 | 1214 | 255 | 2 | 130 | 114 | SPRY4 |
| SE_01_003400315 | chr5:149516384-149564284 |
47900 | 315 | 7 | 1141 | 98 | 2 | 120 | 423 | CSNK1A1,ARHGEF37 |
| SE_01_003400136 | chr5:76784974-76840062 |
55088 | 136 | 11 | 1568 | 449 | 4 | 75 | 454 | F2RL1,S100Z |
| SE_01_003400110 | chr6:129488825-129503468 |
14643 | 110 | 2 | 376 | 16 | 2 | 85 | 296 | LAMA2,ARHGAP18 |
| SE_01_003400103 | chr6:129640524-129693131 |
52607 | 103 | 10 | 1382 | 103 | 11 | 142 | 40 | ARHGAP18 |
| SE_01_003400306 | chr6:142006978-142015909 |
8931 | 306 | 2 | 249 | 7 | 1 | 27 | 33 | NMBR |
| SE_01_003400221 | chr6:144796404-144821321 |
24917 | 221 | 5 | 644 | 66 | 1 | 51 | 83 | UTRN |
| SE_01_003400061 | chr6:144893820-144932322 |
38502 | 61 | 7 | 1147 | 87 | 4 | 36 | 0 | UTRN |
| SE_01_003400156 | chr6:14731621-14745020 |
13399 | 156 | 2 | 410 | 8 | 2 | 36 | 0 | JARID2 |
| SE_01_003400025 | chr6:151012153-151095911 |
83758 | 25 | 17 | 2607 | 157 | 12 | 169 | 356 | MTHFD1L,AKAP12 |
| SE_01_003400360 | chr6:158631075-158657491 |
26416 | 360 | 6 | 735 | 235 | 1 | 43 | 844 | SYTL3,TMEM181,DYNLT1 |
| SE_01_003400005 | chr6:158685998-158820724 |
134726 | 5 | 14 | 4257 | 907 | 10 | 215 | 2633 | EZR,SYTL3,MIR3918,OSTCL,DYNLT1 |
| SE_01_003400047 | chr6:158838064-158871263 |
33199 | 47 | 3 | 921 | 188 | 2 | 50 | 267 | OSTCL,EZR,C6ORF99 |
| SE_01_003400148 | chr6:26024910-26035443 |
10533 | 148 | 1 | 399 | 378 | 9 | 43 | 302 | HIST1H3B,HIST1H4B,HIST1H2AB,HIST1H1A,HIST1H4A,HIST1H3C,HIST1H1C,HIST1H3A,HIST1H2BB |
| SE_01_003400284 | chr6:26051968-26066820 |
14852 | 284 | 2 | 466 | 478 | 6 | 28 | 178 | HIST1H1C,HIST1H3B,HIST1H1A,HIST1H4A,HFE,HIST1H3C,HIST1H4B,HIST1H2AB,HIST1H1T,HIST1H3A,HIST1H2BB,HIST1H4C |
| SE_01_003400233 | chr6:26120025-26127473 |
7448 | 233 | 1 | 287 | 557 | 11 | 51 | 227 | HIST1H2AC,HIST1H2BC,HIST1H2BD,HFE,HIST1H1T,HIST1H1E,HIST1H4C |
| SE_01_003400248 | chr6:26152233-26173814 |
21581 | 248 | 3 | 669 | 385 | 8 | 18 | 361 | HIST1H2BD,HIST1H1E,HIST1H2BG,HIST1H4D,HIST1H2AC,HIST1H2BE,HIST1H3D,HIST1H2BC,HIST1H4E,HIST1H2BF,HIST1H4C,HIST1H2AE,HIST1H1T,HIST1H2AD |
| SE_01_003400359 | chr6:27130503-27135513 |
5010 | 359 | 1 | 206 | 97 | 0 | 42 | 200 | HIST1H2AG,HIST1H2BJ,HIST1H4I,HIST1H2AH,MIR3143,HIST1H2BK |
| SE_01_003400282 | chr6:27888985-27896244 |
7259 | 282 | 1 | 201 | 402 | 3 | 40 | 317 | HIST1H2BO,HIST1H3J,HIST1H2AM,HIST1H3I,HIST1H4L,HIST1H2AL,OR2B2,HIST1H1B |
| SE_01_003400197 | chr6:30746647-30754109 |
7462 | 197 | 1 | 182 | 515 | 2 | 17 | 0 | TUBB,FLOT1,MDC1,IER3 |
| SE_01_003400174 | chr6:30804870-30828886 |
24016 | 174 | 6 | 902 | 8057 | 32 | 15 | 308 | DDR1 |
| SE_01_003400203 | chr6:32966700-32974110 |
7410 | 203 | 1 | 279 | 429 | 6 | 148 | 867 | BRD2,HLA-DMA,HLA-DOA,HLA-DMB |
| SE_01_003400095 | chr6:34223149-34249513 |
26364 | 95 | 4 | 832 | 226 | 5 | 201 | 1746 | HMGA1,C6ORF1 |
| SE_01_003400304 | chr6:42098794-42143396 |
44602 | 304 | 7 | 1267 | 253 | 1 | 173 | 1869 | C6ORF132,TAF8,CCND3,GUCA1A |
| SE_01_003400120 | chr6:56708632-56764888 |
56256 | 120 | 10 | 1399 | 466 | 1 | 70 | 56 | DST |
| SE_01_003400219 | chr6:6780964-6827548 |
46584 | 219 | 8 | 1481 | 125 | 8 | 86 | 0 | LY86-AS1,RREB1 |
| SE_01_003400213 | chr6:73513026-73524845 |
11819 | 213 | 2 | 369 | 335 | 3 | 107 | 658 | EEF1A1 |
| SE_01_003400190 | chr6:73566688-73587149 |
20461 | 190 | 5 | 628 | 424 | 2 | 18 | 0 | EEF1A1 |
| SE_01_003400341 | chr6:73694212-73715319 |
21107 | 341 | 4 | 540 | 92 | 1 | 69 | 376 | CD109,SLC17A5 |
| SE_01_003400106 | chr7:116394758-116478449 |
83691 | 106 | 17 | 2033 | 1047 | 21 | 183 | 247 | CAV1,CAV2 |
| SE_01_003400083 | chr7:116494833-116528926 |
34093 | 83 | 6 | 898 | 659 | 10 | 153 | 1136 | CAV1,CAV2 |
| SE_01_003400086 | chr7:116670581-116717600 |
47019 | 86 | 6 | 1176 | 142 | 5 | 310 | 323 | MET |
| SE_01_003400204 | chr7:121277799-121314749 |
36950 | 204 | 6 | 881 | 187 | 6 | 141 | 126 | C7ORF58,WNT16 |
| SE_01_003400291 | chr7:121328562-121399236 |
70674 | 291 | 13 | 1734 | 416 | 22 | 253 | 1014 | WNT16,FAM3C |
| SE_01_003400260 | chr7:121528438-121558425 |
29987 | 260 | 3 | 811 | 117 | 4 | 49 | 0 | FAM3C |
| SE_01_003400003 | chr7:130871793-130928601 |
56808 | 3 | 1 | 1659 | 238 | 12 | 150 | 534 | MIR29A,LOC646329,MIR29B1 |
| SE_01_003400157 | chr7:130992866-131002192 |
9326 | 157 | 1 | 241 | 13 | 1 | 45 | 27 | FLJ43663,LOC646329 |
| SE_01_003400180 | chr7:131006130-131017502 |
11372 | 180 | 1 | 279 | 10 | 2 | 19 | 0 | FLJ43663 |
| SE_01_003400151 | chr7:158801957-158824654 |
22697 | 151 | 4 | 705 | 1012 | 1 | 16 | 105 | ESYT2,WDR60 |
| SE_01_003400256 | chr7:22853596-22861620 |
8024 | 256 | 1 | 249 | 180 | 1 | 4 | 42 | SNORD93,TOMM7 |
| SE_01_003400237 | chr7:27160626-27174765 |
14139 | 237 | 1 | 415 | 181 | 0 | 390 | 1233 | MIR196B,HOXA10,HOXA9,HOXA6,HOXA11-AS1,HOXA11,HOXA3,HOXA5,HOXA7,HOXA4,HOXA13 |
| SE_01_003400198 | chr7:32657349-32680887 |
23538 | 198 | 3 | 690 | 813 | 2 | 40 | 109 | DPY19L1P1,LOC441208 |
| SE_01_003400230 | chr7:34991319-35005905 |
14586 | 230 | 2 | 372 | 159 | 2 | 10 | 0 | DPY19L1 |
| SE_01_003400164 | chr7:5417565-5430622 |
13057 | 164 | 1 | 394 | 11 | 0 | 262 | 846 | TNRC18 |
| SE_01_003400292 | chr7:55127141-55135275 |
8134 | 292 | 2 | 243 | 17 | 0 | 25 | 0 | EGFR |
| SE_01_003400192 | chr7:6430337-6454587 |
24250 | 192 | 6 | 873 | 637 | 3 | 26 | 465 | DAGLB,KDELR2 |
| SE_01_003400167 | chr7:73798824-73835155 |
36331 | 167 | 6 | 917 | 830 | 2 | 57 | 1117 | CLDN4,WBSCR27,WBSCR28,CLDN3 |
| SE_01_003400179 | chr7:80271688-80285356 |
13668 | 179 | 2 | 332 | 20 | 1 | 39 | 0 | GNAI1 |
| SE_01_003400217 | chr7:812517-836677 |
24160 | 217 | 4 | 903 | 861 | 2 | 8 | 388 | SUN1,GET4 |
| SE_01_003400142 | chr8:102787841-102811844 |
24003 | 142 | 2 | 598 | 151 | 1 | 94 | 670 | AZIN1 |
| SE_01_003400052 | chr8:125109935-125193944 |
84009 | 52 | 9 | 2121 | 253 | 1 | 222 | 58 | NSMCE2,KIAA0196 |
| SE_01_003400143 | chr8:125212176-125232168 |
19992 | 143 | 4 | 465 | 61 | 2 | 59 | 0 | NSMCE2 |
| SE_01_003400093 | chr8:125258747-125303511 |
44764 | 93 | 8 | 1253 | 60 | 8 | 138 | 87 | NSMCE2,TRIB1 |
| SE_01_003400165 | chr8:125425524-125464921 |
39397 | 165 | 4 | 1121 | 26 | 22 | 277 | 898 | TRIB1 |
| SE_01_003400006 | chr8:125636725-125702887 |
66162 | 6 | 8 | 1925 | 91 | 8 | 195 | 0 | TRIB1 |
| SE_01_003400004 | chr8:127204040-127308641 |
104601 | 4 | 9 | 2949 | 48 | 13 | 371 | 478 | POU5F1B |
| SE_01_003400252 | chr8:127732766-127744149 |
11383 | 252 | 2 | 316 | 2 | 0 | 97 | 734 | MYC |
| SE_01_003400363 | chr8:127849982-127860563 |
10581 | 363 | 2 | 323 | 10 | 0 | 21 | 93 | PVT1,MIR1204 |
| SE_01_003400063 | chr8:129681544-129712427 |
30883 | 63 | 3 | 875 | 238 | 2 | 91 | 0 | GSDMC |
| SE_01_003400134 | chr8:143569373-143580139 |
10766 | 134 | 2 | 433 | 768 | 1 | 117 | 2040 | EEF1D,C8ORF73,NAPRT1,GSDMD,PYCRL,TSTA3,TIGD5,ZC3H3 |
| SE_01_003400031 | chr8:143933103-143954661 |
21558 | 31 | 1 | 761 | 846 | 2 | 258 | 2324 | PLEC,MIR661,GRINA,PARP10 |
| SE_01_003400115 | chr8:17835471-17856902 |
21431 | 115 | 3 | 926 | 574 | 1 | 59 | 0 | FGL1,MTUS1 |
| SE_01_003400337 | chr8:29654988-29676679 |
21691 | 337 | 4 | 700 | 52 | 1 | 57 | 0 | C8ORF75,MIR3148 |
| SE_01_003400236 | chr8:38995230-39005456 |
10226 | 236 | 1 | 303 | 72 | 0 | 44 | 349 | ADAM9,TM2D2,HTRA4 |
| SE_01_003400364 | chr8:39031884-39042629 |
10745 | 364 | 2 | 270 | 68 | 0 | 6 | 41 | ADAM9,TM2D2 |
| SE_01_003400092 | chr8:61749217-61769409 |
20192 | 92 | 3 | 549 | 45 | 0 | 5 | 373 | ASPH |
| SE_01_003400125 | chr8:6546178-6603934 |
57756 | 125 | 7 | 2504 | 116 | 6 | 190 | 124 | MCPH1,ANGPT2 |
| SE_01_003400194 | chr8:8287615-8311646 |
24031 | 194 | 3 | 1043 | 588 | 3 | 74 | 0 | FLJ10661 |
| SE_01_003400002 | chr8:93818722-93944851 |
126129 | 2 | 14 | 3526 | 1013 | 11 | 335 | 733 | PDP1,TMEM67 |
| SE_01_003400314 | chr9:107238107-107249767 |
11660 | 314 | 3 | 300 | 40 | 1 | 23 | 0 | RAD23B |
| SE_01_003400084 | chr9:129476475-129509751 |
33276 | 84 | 9 | 948 | 92 | 0 | 96 | 874 | C9ORF50 |
| SE_01_003400129 | chr9:129548493-129611680 |
63187 | 129 | 9 | 1927 | 252 | 7 | 76 | 576 | ASB6,METTL11A,C9ORF50 |
| SE_01_003400010 | chr9:21504586-21618056 |
113470 | 10 | 8 | 3408 | 610 | 14 | 246 | 218 | MIR31,LOC554202,IFNE |
| SE_01_003400026 | chr9:21667918-21713300 |
45382 | 26 | 2 | 1744 | 459 | 22 | 113 | 0 | MTAP |
| SE_01_003400124 | chr9:21770476-21814261 |
43785 | 124 | 7 | 1518 | 322 | 41 | 78 | 152 | MTAP |
| SE_01_003400226 | chr9:37462987-37478222 |
15235 | 226 | 3 | 413 | 96 | 0 | 42 | 141 | ZBTB5,POLR1E,GRHPR |
| SE_01_003400325 | chrX:40130022-40177328 |
47306 | 325 | 10 | 855 | 8 | 0 | 651 | 119 | BCOR |
| SE_01_003400008 | chrX:45697362-45853317 |
155955 | 8 | 22 | 3096 | 187 | 9 | 374 | 585 | MIR221,MIR222 |
| SE_01_003400189 | chrX:46315522-46334008 |
18486 | 189 | 3 | 394 | 27 | 0 | 50 | 141 | ZNF673 |
SE annotation visualization
Information description of sample and annotation
| Case ID: | Name:ENCSR661KMA |
| Input ID: | Name:ENCSR198WIH |
| Common SNP: | dbSNP |
| eQTL: | GTEx, HaploReg v4.1, PancanQTL |
| Risk SNP : | GWAS Catalog, GWASdb v2.0 |
| TFBS: | TFBS Conserved of UCSC |
| CRISPR/Cas9 target site: | CRISPR Targets of UCSC |
Software and parameters used
| Read Mapping: | bowtie(v2.4.4) -p 10 -x -S -U |
| Peak Calling: | macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto |
| Stitching Distance: | 12.5 kb |
| TSS Exclusive Zone: | +/- 2 kb |