SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400113
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr12:76017250-76038783
Size: 21533
Super-enhancer rank 113
Number of SE elements: 4
ChIP density(Case|Control): 59461.2262|1147.7089
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PHLDA1 ;
ROSE Overlap PHLDA1 ;
ROSE Proximal NAP1L1 ;
ROSE Closest PHLDA1 ;
Lasso ;
PreSTIGE ;
ABC PHLDA1 ; NAP1L1 ; KRR1 ; GLIPR1 ; CAPS2 ; ATXN7L3B ; BBS10 ; OSBPL8 ; ZDHHC17 ; CSRP2 ; E2F7 ; GLIPR1L1 ;
BETA NAP1L1 ; PHLDA1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400113 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers