SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400222
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr17:28718622-28729953
Size: 11331
Super-enhancer rank 222
Number of SE elements: 1
ChIP density(Case|Control): 39227.922|997.128
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SNORD4B ;
ROSE Overlap SNORD42B ; TLCD1 ; RPL23A ; SNORD4A ; NEK8 ; SNORD42A ; SNORD4B ;
ROSE Proximal RAB34 ; PROCA1 ; TRAF4 ;
ROSE Closest SNORD4B ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PROCA1 ; TRAF4 ; SNORD42A ; KIAA0100 ; NEK8 ; RAB34 ; SNORD4B ; SNORD4A ; FAM222B ; SDF2 ; RPL23A ; SNORD42B ; TLCD1 ; NARR ; SUPT6H ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400222 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers