SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400171
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr12:6960400-6972503
Size: 12103
Super-enhancer rank 171
Number of SE elements: 1
ChIP density(Case|Control): 47785.9572|1405.0422
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SCARNA12 ;
ROSE Overlap PTPN6 ; PHB2 ; SCARNA12 ; MIR141 ; EMG1 ; MIR200C ;
ROSE Proximal C12orf57 ; ATN1 ; LPCAT3 ; ENO2 ;
ROSE Closest SCARNA12 ;
Lasso ;
PreSTIGE ;
ABC TPI1 ; USP5 ; CDCA3 ;
BETA PTPN6 ; C1S ; C12orf57 ; MIR141 ; LPCAT3 ; TPI1 ; ENO2 ; MIR200C ; ATN1 ; EMG1 ; RNU7-1 ; SPSB2 ; PHB2 ; SCARNA12 ; LRRC23 ; DSTNP2 ; RPL13P5 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400171 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers