SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400127
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr16:89993234-89997434
Size: 4200
Super-enhancer rank 127
Number of SE elements: 1
ChIP density(Case|Control): 54306.84|530.88
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: DBNDD1 ;
ROSE Overlap AFG3L1P ;
ROSE Proximal DBNDD1 ; DEF8 ; C16orf3 ; AFG3L1P ; CENPBD1 ; GAS8 ;
ROSE Closest DBNDD1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MC1R ; DEF8 ; AFG3L1P ; DBNDD1 ; TUBB3 ; GAS8 ; URAHP ; GAS8-AS1 ; PRDM7 ; CENPBD1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400127 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers