SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003400036
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr2:231603854-231682183
Size: 78329
Super-enhancer rank 36
Number of SE elements: 10
ChIP density(Case|Control): 117672.1544|5247.976
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PTMA ;
ROSE Overlap ;
ROSE Proximal C2orf57 ; PTMA ; MIR1244-2 ;
ROSE Closest C2orf57 ;
Lasso ;
PreSTIGE ;
ABC CAB39 ; ITM2C ; LINC01907 ; SP100 ; SP140L ; SLC16A14 ; DNER ; TRIP12 ; FBXO36 ; SP110 ; C2orf72 ; PSMD1 ;
BETA MIR1244-1 ; MIR1244-3 ; MIR1244-4 ; C2orf57 ; PTMA ; MIR1244-2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400036 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers