SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003400038
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr11:65471090-65509086
Size: 37996
Super-enhancer rank 38
Number of SE elements: 8
ChIP density(Case|Control): 114447.7516|4092.1692
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MALAT1 ;
ROSE Overlap MALAT1 ;
ROSE Proximal NEAT1 ; MIR612 ; SCYL1 ; LTBP3 ;
ROSE Closest MALAT1 ;
Lasso ;
PreSTIGE ;
ABC KAT5 ;
BETA LTBP3 ; SCYL1 ; MIR612 ; SSSCA1 ; FAM89B ; MALAT1 ; NEAT1 ; SSSCA1-AS1 ; EHBP1L1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400038 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers