SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400351
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr1:44706971-44743505
Size: 36534
Super-enhancer rank 351
Number of SE elements: 5
ChIP density(Case|Control): 30743.361|2732.7432
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: KIF2C ;
ROSE Overlap C1orf228 ; KIF2C ;
ROSE Proximal SNORD55 ; BEST4 ; TMEM53 ; SNORD46 ; SNORD38A ; RPS8 ; SNORD38B ;
ROSE Closest KIF2C ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SNORD55 ; TMEM53 ; KIF2C ; RNU5D-1 ; C1orf228 ; SNORD46 ; SNORD38B ; SNORD38A ; RNU5F-1 ; BEST4 ; BTBD19 ; TCTEX1D4 ; RPS8 ; PLK3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400351 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers