SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400253
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr19:1744701-1774188
Size: 29487
Super-enhancer rank 253
Number of SE elements: 4
ChIP density(Case|Control): 37159.5174|2002.1673
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ONECUT3 ;
ROSE Overlap ONECUT3 ;
ROSE Proximal LOC100288123 ; MIR1909 ; ATP8B3 ;
ROSE Closest ONECUT3 ;
Lasso ;
PreSTIGE ;
ABC ZNF555 ; SLC39A3 ; DIRAS1 ; GNG7 ; LMNB2 ; TIMM13 ; SPPL2B ; LSM7 ; ZNF554 ; THOP1 ; SGTA ; LOC100996351 ; GNA11 ; TLE2 ; TLE6 ; ZNF77 ; ZNF57 ; ZNF556 ; CNN2 ; GRIN3B ; WDR18 ; AMH ; R3HDM4 ; MED16 ; PTBP1 ; REXO1 ; KLF16 ; RNF126 ; FGF22 ; POLRMT ; MADCAM1 ; AP3D1 ; IZUMO4 ; ODF3L2 ; C2CD4C ; MIER2 ; MOB3A ; MKNK2 ; BTBD2 ; CSNK1G2 ; SCAMP4 ; ADAT3 ; ABHD17A ; MISP ; PALM ; FSTL3 ; UQCR11 ; TCF3 ; MBD3 ; ONECUT3 ; ATP8B3 ; MEX3D ; OAZ1 ; ADAMTSL5 ; REEP6 ; PCSK4 ; C19orf25 ; RPS15 ; LOC100288123 ; DAZAP1 ; SBNO2 ; STK11 ; ATP5D ; CIRBP ; CIRBP-AS1 ; C19orf24 ; EFNA2 ; MUM1 ; NDUFS7 ; GAMT ;
BETA ATP8B3 ; MIR1909 ; LOC100288123 ; REXO1 ; ONECUT3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400253 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers