SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400245
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr12:12716286-12727310
Size: 11024
Super-enhancer rank 245
Number of SE elements: 1
ChIP density(Case|Control): 37412.1488|1231.3808
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: APOLD1 ;
ROSE Overlap APOLD1 ; CDKN1B ;
ROSE Proximal MIR613 ; GPR19 ;
ROSE Closest APOLD1 ;
Lasso ;
PreSTIGE ;
ABC DUSP16 ;
BETA MIR613 ; DDX47 ; APOLD1 ; CDKN1B ; GPR19 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400245 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers