SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400317
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr19:42241543-42284401
Size: 42858
Super-enhancer rank 317
Number of SE elements: 6
ChIP density(Case|Control): 32880.6576|2532.9078
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ERF ;
ROSE Overlap GSK3A ; ERF ;
ROSE Proximal CIC ; MEGF8 ; PAFAH1B3 ; PRR19 ; TMEM145 ; DEDD2 ; ZNF526 ;
ROSE Closest ERF ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PAFAH1B3 ; ZNF526 ; CIC ; DEDD2 ; TMEM145 ; PRR19 ; MEGF8 ; GSK3A ; ERF ; MIR8077 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400317 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers