SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003400262
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr17:48470242-48491285
Size: 21043
Super-enhancer rank 262
Number of SE elements: 3
ChIP density(Case|Control): 37660.6571|3385.8187
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HOXB1 ;
ROSE Overlap ;
ROSE Proximal HOXB1 ; SKAP1 ;
ROSE Closest HOXB1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA HOXB3 ; LOC101927166 ; HOXB-AS1 ; MIR10A ; SKAP1 ; HOXB4 ; HOXB2 ; HOXB1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400262 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers