SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400199
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr1:26848012-26873035
Size: 25023
Super-enhancer rank 199
Number of SE elements: 5
ChIP density(Case|Control): 43162.1727|1779.1353
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SFN ;
ROSE Overlap SFN ; ZDHHC18 ;
ROSE Proximal GPATCH3 ; GPN2 ; NR0B2 ; NUDC ;
ROSE Closest SFN ;
Lasso ;
PreSTIGE ;
ABC RPS6KA1 ;
BETA KDF1 ; GPATCH3 ; SFN ; ZDHHC18 ; PIGV ; NR0B2 ; NUDC ; GPN2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400199 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers