SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400288
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr11:10509441-10561755
Size: 52314
Super-enhancer rank 288
Number of SE elements: 7
ChIP density(Case|Control): 40124.838|8040.6618
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RNF141 ;
ROSE Overlap LOC100129827 ; RNF141 ; LYVE1 ;
ROSE Proximal MTRNR2L8 ; AMPD3 ;
ROSE Closest RNF141 ;
Lasso ;
PreSTIGE ;
ABC AMPD3 ; LYVE1 ; MRVI1-AS1 ; RNF141 ; CTR9 ;
BETA LYVE1 ; MTRNR2L8 ; AMPD3 ; RNF141 ; MRVI1-AS1 ; MIR4485 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400288 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers