SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003400239
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr1:155127482-155137774
Size: 10292
Super-enhancer rank 239
Number of SE elements: 2
ChIP density(Case|Control): 38015.5604|1088.8936
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SLC50A1 ;
ROSE Overlap SLC50A1 ; EFNA1 ;
ROSE Proximal EFNA3 ; DPM3 ; TRIM46 ; EFNA1 ; KRTCAP2 ; SLC50A1 ;
ROSE Closest SLC50A1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ADAM15 ; MUC1 ; KRTCAP2 ; EFNA1 ; TRIM46 ; SLC50A1 ; DCST1 ; LOC100505666 ; DCST2 ; MTX1 ; DPM3 ; THBS3 ; EFNA4 ; GBAP1 ; MIR92B ; EFNA3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400239 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers