SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003400082
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr12:12869559-12904950
Size: 35391
Super-enhancer rank 82
Number of SE elements: 8
ChIP density(Case|Control): 74352.9519|3418.7706
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GPRC5A ;
ROSE Overlap RPL13AP20 ; GPRC5A ;
ROSE Proximal GPRC5D ; MIR614 ;
ROSE Closest GPRC5A ;
Lasso ;
PreSTIGE ;
ABC CDKN1B ; LOC100506314 ; GPRC5A ; RPL13AP20 ; DDX47 ; APOLD1 ; GPR19 ; CREBL2 ; DUSP16 ; BORCS5 ; LOH12CR2 ; LRP6 ; BCL2L14 ; ETV6 ; LOC101928162 ; GRIN2B ; LINC01559 ; FAM234B ; HTR7P1 ; HEBP1 ;
BETA RPL13AP20 ; GPRC5A ; DDX47 ; LOC100506314 ; MIR614 ; GPRC5D ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400082 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers