SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400172
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr1:149838065-149846395
Size: 8330
Super-enhancer rank 172
Number of SE elements: 1
ChIP density(Case|Control): 47404.479|1191.905
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HIST2H2AA3 ;
ROSE Overlap HIST2H2AA4 ; HIST2H3A ;
ROSE Proximal HIST2H2BF ; HIST2H4B ; HIST2H3D ; HIST2H2BE ; HIST2H2BC ; HIST2H2AB ; HIST2H2AC ; HIST2H3C ; HIST2H2AA3 ;
ROSE Closest HIST2H2AA4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA HIST2H2AA3 ; HIST2H2BF ; HIST2H2BE ; SV2A ; HIST2H3A ; MTMR11 ; HIST2H2AB ; HIST2H4A ; HIST2H2AC ; SF3B4 ; FCGR1A ; HIST2H2BC ; HIST2H4B ; HIST2H2AA4 ; HIST2H3D ; HIST2H3C ; BOLA1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400172 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers