SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400087
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr19:39396906-39413298
Size: 16392
Super-enhancer rank 87
Number of SE elements: 2
ChIP density(Case|Control): 69687.3096|1555.6008
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ZFP36 ;
ROSE Overlap ZFP36 ; PLEKHG2 ; MED29 ;
ROSE Proximal SUPT5H ; RPS16 ; PAF1 ;
ROSE Closest ZFP36 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ZFP36 ; GMFG ; SUPT5H ; PAF1 ; TIMM50 ; RPS16 ; SAMD4B ; MIR4530 ; MED29 ; DLL3 ; LRFN1 ; PLEKHG2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400087 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers