SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003400347
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr12:88498547-88581420
Size: 82873
Super-enhancer rank 347
Number of SE elements: 15
ChIP density(Case|Control): 38163.0165|9994.4838
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: KITLG ;
ROSE Overlap KITLG ;
ROSE Proximal ;
ROSE Closest KITLG ;
Lasso ;
PreSTIGE ;
ABC TMTC3 ; CEP290 ;
BETA KITLG ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400347 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers