SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400232
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr12:6530549-6541443
Size: 10894
Super-enhancer rank 232
Number of SE elements: 1
ChIP density(Case|Control): 38381.7408|923.8112
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GAPDH ;
ROSE Overlap GAPDH ; NCAPD2 ; IFFO1 ;
ROSE Proximal IFFO1 ; MRPL51 ; NOP2 ; SCARNA11 ; SCARNA10 ;
ROSE Closest GAPDH ;
Lasso ;
PreSTIGE ;
ABC TAPBPL ; VAMP1 ; MRPL51 ; NCAPD2 ;
BETA IFFO1 ; LPAR5 ; CD27-AS1 ; GAPDH ; NOP2 ; SCARNA11 ; VAMP1 ; CHD4 ; MRPL51 ; SCARNA10 ; NCAPD2 ; CD27 ; TAPBPL ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400232 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers