SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400080
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr1:28499586-28538866
Size: 39280
Super-enhancer rank 80
Number of SE elements: 6
ChIP density(Case|Control): 74046.728|2765.312
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RCC1 ;
ROSE Overlap SNHG3 ; PHACTR4 ; RCC1 ;
ROSE Proximal SNORA44 ; SNORD99 ; SNORA61 ; SNHG3 ; TRNAU1AP ; SNORA16A ; SNHG12 ;
ROSE Closest RCC1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RCC1 ; PHACTR4 ; RAB42 ; SNHG3 ; SNORA16A ; SNHG12 ; SNORD99 ; TRNAU1AP ; SNORA61 ; SNORA73B ; SNORA44 ; SNORA73A ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400080 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers