SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400231
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr19:18278486-18307939
Size: 29453
Super-enhancer rank 231
Number of SE elements: 5
ChIP density(Case|Control): 39449.3482|1991.0228
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIR3188 ;
ROSE Overlap MIR3188 ; JUND ; LSM4 ;
ROSE Proximal PDE4C ; LOC729966 ; KIAA1683 ; PGPEP1 ;
ROSE Closest MIR3188 ;
Lasso ;
PreSTIGE ;
ABC MPV17L2 ; RAB3A ;
BETA LSM4 ; PDE4C ; MIR3189 ; GDF15 ; MPV17L2 ; JUND ; KIAA1683 ; LOC729966 ; PGPEP1 ; RAB3A ; MIR3188 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400231 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers