SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400021
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr1:94196195-94330902
Size: 134707
Super-enhancer rank 21
Number of SE elements: 22
ChIP density(Case|Control): 165245.0769|16393.8419
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ARHGAP29 ;
ROSE Overlap ARHGAP29 ;
ROSE Proximal ;
ROSE Closest ARHGAP29 ;
Lasso ;
PreSTIGE ;
ABC BCAR3 ; LOC100129046 ; FNBP1L ; DNTTIP2 ; TMED5 ; MTF2 ; FAM69A ; EVI5 ; BTBD8 ; CCDC18 ; CCDC18-AS1 ; DR1 ; GCLM ; ABCD3 ; SLC44A3-AS1 ; SLC44A3 ; LOC101928118 ; RWDD3 ;
BETA ARHGAP29 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400021 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers