SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400356
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr12:65926286-65953333
Size: 27047
Super-enhancer rank 356
Number of SE elements: 3
ChIP density(Case|Control): 33224.5348|5655.5277
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RPSAP52 ;
ROSE Overlap HMGA2 ;
ROSE Proximal ;
ROSE Closest RPSAP52 ;
Lasso ;
PreSTIGE ;
ABC LOC105369187 ; LOC100507065 ; LOC100129940 ; GNS ; LEMD3 ; HELB ; MSRB3 ; XPOT ; C12orf66 ; TMEM5 ; HMGA2 ; RPSAP52 ; LLPH ; LLPH-AS1 ; TMBIM4 ; TBK1 ;
BETA LOC100129940 ; MIR6074 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400356 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers