SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400123
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr17:40946575-40960332
Size: 13757
Super-enhancer rank 123
Number of SE elements: 1
ChIP density(Case|Control): 57544.1553|1631.5802
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: KRT39 ;
ROSE Overlap KRT39 ;
ROSE Proximal KRTAP3-3 ; KRTAP3-1 ; KRTAP3-2 ; KRT40 ; KRT23 ;
ROSE Closest KRT39 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA KRTAP1-4 ; KRTAP1-5 ; KRTAP1-1 ; KRTAP3-2 ; KRT40 ; KRTAP3-3 ; KRT23 ; KRTAP2-1 ; KRT12 ; KRT20 ; KRTAP3-1 ; KRTAP1-3 ; KRT39 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400123 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers