SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400003
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr7:130871793-130928601
Size: 56808
Super-enhancer rank 3
Number of SE elements: 1
ChIP density(Case|Control): 289050.4656|7356.636
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LOC646329 ;
ROSE Overlap MIR29A ; LOC646329 ; MIR29B1 ;
ROSE Proximal ;
ROSE Closest LOC646329 ;
Lasso ;
PreSTIGE ;
ABC MKLN1 ; MKLN1-AS ; LINC-PINT ;
BETA MIR29B1 ; LOC100506860 ; MIR29A ; LINC-PINT ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400003 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers