SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003400359
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr6:27130503-27135513
Size: 5010
Super-enhancer rank 359
Number of SE elements: 1
ChIP density(Case|Control): 27992.373|552.102
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HIST1H2AG ;
ROSE Overlap HIST1H2AG ; HIST1H2BJ ;
ROSE Proximal HIST1H4I ; HIST1H2AH ; MIR3143 ; HIST1H2BK ;
ROSE Closest HIST1H2AG ;
Lasso ;
PreSTIGE ;
ABC ;
BETA HIST1H4I ; HIST1H2AH ; HIST1H2BJ ; MIR3143 ; HIST1H2AG ; HIST1H2BK ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400359 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers