SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400007
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr10:112471288-112565498
Size: 94210
Super-enhancer rank 7
Number of SE elements: 12
ChIP density(Case|Control): 244974.263|17692.638
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: VTI1A ;
ROSE Overlap VTI1A ;
ROSE Proximal ZDHHC6 ;
ROSE Closest VTI1A ;
Lasso ;
PreSTIGE ;
ABC RPL13AP6 ; SHOC2 ; BBIP1 ; PDCD4 ; PDCD4-AS1 ; RBM20 ; SMNDC1 ;
BETA VTI1A ; ZDHHC6 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400007 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers