SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400289
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr19:40714230-40720072
Size: 5842
Super-enhancer rank 289
Number of SE elements: 1
ChIP density(Case|Control): 32466.3308|465.0232
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ITPKC ;
ROSE Overlap ITPKC ; ADCK4 ;
ROSE Proximal C19orf54 ; SNRPA ; NUMBL ;
ROSE Closest ITPKC ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RAB4B ; ITPKC ; NUMBL ; SNRPA ; C19orf54 ; RAB4B-EGLN2 ; EGLN2 ; MIA ; ADCK4 ; MIA-RAB4B ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400289 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers