SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003400197
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr6:30746647-30754109
Size: 7462
Super-enhancer rank 197
Number of SE elements: 1
ChIP density(Case|Control): 42476.6888|985.7302
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: IER3 ;
ROSE Overlap ;
ROSE Proximal TUBB ; FLOT1 ; MDC1 ; IER3 ;
ROSE Closest IER3 ;
Lasso ;
PreSTIGE ;
ABC SFTA2 ; GTF2H4 ; LOC105375014 ; PPP1R18 ; NRM ; MDC1 ; TUBB ; HCG20 ; IER3 ; FLOT1 ;
BETA NRM ; PPP1R18 ; TUBB ; FLOT1 ; LINC00243 ; MDC1 ; DHX16 ; IER3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400197 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers