SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003400296
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr12:122880820-122898859
Size: 18039
Super-enhancer rank 296
Number of SE elements: 4
ChIP density(Case|Control): 33662.5779|2105.1513
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: VPS37B ;
ROSE Overlap VPS37B ;
ROSE Proximal HIP1R ;
ROSE Closest VPS37B ;
Lasso ;
PreSTIGE ;
ABC KNTC1 ; RSRC2 ; ZCCHC8 ; CLIP1 ; CLIP1-AS1 ; VPS33A ; DENR ;
BETA ARL6IP4 ; OGFOD2 ; HIP1R ; ABCB9 ; VPS37B ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400296 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers