SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003400055
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116
Genomic region: chr1:156096045-156131120
Size: 35075
Super-enhancer rank 55
Number of SE elements: 5
ChIP density(Case|Control): 97073.57|3219.885
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LMNA ;
ROSE Overlap LMNA ;
ROSE Proximal ROBLD3 ; RAB25 ; SEMA4A ; UBQLN4 ; MEX3A ;
ROSE Closest LMNA ;
Lasso ;
PreSTIGE ;
ABC RHBG ; CCT3 ; TSACC ; PMF1 ; GLMP ; TMEM79 ; SMG5 ; PAQR6 ; LAMTOR2 ; RAB25 ; PMF1-BGLAP ; SLC25A44 ; LMNA ; MEX3A ; BGLAP ; UBQLN4 ; SSR2 ; ARHGEF2 ; RXFP4 ; KIAA0907 ; RIT1 ; SYT11 ; GON4L ; MSTO2P ; DAP3 ; YY1AP1 ;
BETA PMF1-BGLAP ; SSR2 ; SLC25A44 ; LMNA ; RAB25 ; LAMTOR2 ; PMF1 ; SEMA4A ; UBQLN4 ; MEX3A ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003400055 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers