| SE_02_103602141 |
chr12:53949913-53967008 |
Sample_02_1036 |
Mammary gland |
HCC70_XY018 |
2141 |
4 |
475 |
46 | 5 | 239 |
792 |
HOXC12,HOTAIR,HOXC-AS2,HOXC4,HOXC11,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_063300149 |
chr12:53957014-53979116 |
Sample_02_0633 |
Gastrointestinal Stromal |
GIST-48B_Imatinib |
149 |
7 |
578 |
49 | 4 | 383 |
1368 |
HOXC11,HOTAIR,HOXC12,HOXC4,HOXC-AS2,HOXC13,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_063400327 |
chr12:53962697-53970484 |
Sample_02_0634 |
Gastrointestinal Stromal |
GIST-48B_JQ1 |
327 |
1 |
187 |
18 | 1 | 114 |
694 |
HOTAIR,HOXC-AS2,HOXC4,HOXC11,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_060600451 |
chr12:53962792-53970096 |
Sample_02_0606 |
Skin |
Skin Fibroblast_Nutlin3A |
451 |
1 |
174 |
18 | 1 | 111 |
690 |
HOTAIR,HOXC-AS2,HOXC4,HOXC11,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_148100340 |
chr12:53962835-53971081 |
Sample_02_1481 |
Bone |
MIC |
340 |
1 |
196 |
18 | 1 | 128 |
685 |
HOTAIR,HOXC-AS2,HOXC4,HOXC11,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_147600730 |
chr12:53962872-53970103 |
Sample_02_1476 |
Bone |
EW-1 |
730 |
1 |
172 |
18 | 1 | 111 |
680 |
HOTAIR,HOXC-AS2,HOXC4,HOXC11,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_063200417 |
chr12:53962914-53970540 |
Sample_02_0632 |
Gastrointestinal Stromal |
GIST-48B_DMSO |
417 |
1 |
184 |
18 | 1 | 114 |
676 |
HOTAIR,HOXC-AS2,HOXC4,HOXC11,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_060500473 |
chr12:53962938-53970008 |
Sample_02_0605 |
Skin |
Skin Fibroblast_DMSO |
473 |
1 |
165 |
18 | 1 | 111 |
674 |
HOTAIR,HOXC-AS2,HOXC4,HOXC11,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_070200338 |
chr12:53963083-53978222 |
Sample_02_0702 |
Bone |
David_TC71 |
338 |
4 |
364 |
31 | 1 | 333 |
1292 |
HOXC11,HOTAIR,HOXC-AS2,HOXC4,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_148500621 |
chr12:53963117-53970215 |
Sample_02_1485 |
Bone |
SK-ES-1 |
621 |
1 |
170 |
18 | 1 | 111 |
653 |
HOTAIR,HOXC-AS2,HOXC4,HOXC11,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_063500018 |
chr12:53963222-53977314 |
Sample_02_0635 |
Synovial sarcoma |
HSSYII_Untreated |
18 |
1 |
339 |
28 | 1 | 331 |
1276 |
HOXC11,HOTAIR,HOXC-AS2,HOXC4,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_055500177 |
chr12:53963235-53980018 |
Sample_02_0555 |
Other |
HAP1_WT |
177 |
2 |
404 |
33 | 1 | 367 |
1274 |
HOXC11,HOTAIR,HOXC12,HOXC4,HOXC-AS2,HOXC13,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_126100635 |
chr12:53963242-53978348 |
Sample_02_1261 |
Bone |
Im-GCT-3504_G34W_unedited |
635 |
5 |
362 |
31 | 1 | 335 |
1274 |
HOXC11,HOTAIR,HOXC-AS2,HOXC4,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_135600770 |
chr12:53963277-53969486 |
Sample_02_1356 |
Umbilical cord |
umbilical cord-derived mesenchymal stem cells_Young |
770 |
1 |
146 |
18 | 1 | 109 |
626 |
HOTAIR,HOXC-AS2,HOXC4,HOXC11,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_148200559 |
chr12:53963669-53969863 |
Sample_02_1482 |
Bone |
POE |
559 |
1 |
141 |
16 | 1 | 93 |
569 |
HOTAIR,HOXC-AS2,HOXC4,HOXC11,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_094100617 |
chr12:53964004-53978895 |
Sample_02_0941 |
Brain |
T98G |
617 |
3 |
342 |
27 | 0 | 336 |
1139 |
HOXC11,HOTAIR,HOXC12,HOXC4,HOXC-AS2,HOXC13,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_108000799 |
chr12:53965083-53968774 |
Sample_02_1080 |
Muscle |
JR1 shCtrl |
799 |
1 |
89 |
9 | 0 | 54 |
393 |
HOTAIR,HOXC-AS2,HOXC4,HOXC11,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_086900986 |
chr12:53965118-53975242 |
Sample_02_0869 |
Fibroblast |
VH10_NO_UV |
986 |
2 |
242 |
16 | 0 | 231 |
837 |
HOXC11,HOTAIR,HOXC-AS2,HOXC4,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_079900294 |
chr12:53965175-53975542 |
Sample_02_0799 |
Brain |
MESMN1 |
294 |
2 |
251 |
16 | 0 | 244 |
880 |
HOXC11,HOTAIR,HOXC-AS2,HOXC4,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_148900183 |
chr12:53965374-53978956 |
Sample_02_1489 |
Bone |
TC-106 |
183 |
5 |
319 |
23 | 0 | 304 |
1079 |
HOXC11,HOTAIR,HOXC12,HOXC4,HOXC-AS2,HOXC13,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_01_011200369 |
chr12:53966385-53970268 |
Sample_01_0112 |
Embryonic kidney |
HEK293_encode |
369 |
1 |
94 |
5 | 0 | 43 |
318 |
HOTAIR,HOXC-AS2,HOXC4,HOXC11,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_147600809 |
chr12:53971148-53977251 |
Sample_02_1476 |
Bone |
EW-1 |
809 |
1 |
150 |
10 | 0 | 202 |
638 |
HOXC11,HOTAIR,HOXC-AS2,HOXC4,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_148100177 |
chr12:53971580-53979148 |
Sample_02_1481 |
Bone |
MIC |
177 |
1 |
174 |
11 | 0 | 234 |
638 |
HOXC11,HOTAIR,HOXC12,HOXC4,HOXC-AS2,HOXC13,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_074900555 |
chr12:53971636-53979151 |
Sample_02_0749 |
Mammary gland |
HCC1599_GSI |
555 |
1 |
171 |
11 | 0 | 234 |
638 |
HOXC11,HOTAIR,HOXC12,HOXC4,HOXC-AS2,HOXC13,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_060600778 |
chr12:53971833-53979034 |
Sample_02_0606 |
Skin |
Skin Fibroblast_Nutlin3A |
778 |
1 |
161 |
9 | 0 | 225 |
638 |
HOXC11,HOTAIR,HOXC12,HOXC4,HOXC-AS2,HOXC13,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_060500639 |
chr12:53971895-53979088 |
Sample_02_0605 |
Skin |
Skin Fibroblast_DMSO |
639 |
1 |
161 |
9 | 0 | 226 |
638 |
HOXC11,HOTAIR,HOXC12,HOXC4,HOXC-AS2,HOXC13,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_108000449 |
chr12:53972011-53977297 |
Sample_02_1080 |
Muscle |
JR1 shCtrl |
449 |
1 |
124 |
4 | 0 | 200 |
638 |
HOXC11,HOTAIR,HOXC-AS2,HOXC4,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_077700225 |
chr12:53972254-53980123 |
Sample_02_0777 |
Mammary gland |
MCF7_TAMR |
225 |
1 |
185 |
9 | 0 | 236 |
638 |
HOXC11,HOTAIR,HOXC12,HOXC4,HOXC-AS2,HOXC13,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_148200213 |
chr12:53972267-53982330 |
Sample_02_1482 |
Bone |
POE |
213 |
1 |
250 |
11 | 0 | 257 |
638 |
HOXC11,HOTAIR,HOXC12,HOXC4,HOXC-AS2,HOXC13,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_070100600 |
chr12:53972311-53976749 |
Sample_02_0701 |
Bone |
David_TC32 |
600 |
1 |
105 |
3 | 0 | 190 |
638 |
HOXC11,HOTAIR,HOXC-AS2,HOXC4,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_081000208 |
chr12:53972394-53976055 |
Sample_02_0810 |
Mammary gland |
T47D noSerum |
208 |
1 |
86 |
1 | 0 | 171 |
536 |
HOXC11,HOTAIR,HOXC-AS2,HOXC4,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_108800405 |
chr12:53972408-53979624 |
Sample_02_1088 |
Mammary gland |
T47D_shCtrl_45min |
405 |
1 |
171 |
9 | 0 | 230 |
638 |
HOXC11,HOTAIR,HOXC12,HOXC4,HOXC-AS2,HOXC13,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_148300889 |
chr12:53972446-53977351 |
Sample_02_1483 |
Bone |
RD-ES |
889 |
1 |
115 |
4 | 0 | 192 |
638 |
HOXC11,HOTAIR,HOXC-AS2,HOXC4,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_109000257 |
chr12:53972458-53979599 |
Sample_02_1090 |
Mammary gland |
T47D_shCtrl_8hr |
257 |
1 |
165 |
9 | 0 | 228 |
638 |
HOXC11,HOTAIR,HOXC12,HOXC4,HOXC-AS2,HOXC13,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_147700619 |
chr12:53972464-53976688 |
Sample_02_1477 |
Bone |
EW-22 |
619 |
1 |
101 |
3 | 0 | 181 |
638 |
HOXC11,HOTAIR,HOXC-AS2,HOXC4,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_111400230 |
chr12:53972539-53977479 |
Sample_02_1114 |
Embryonic kidney |
HEK293 |
230 |
1 |
117 |
4 | 0 | 189 |
638 |
HOXC11,HOTAIR,HOXC-AS2,HOXC4,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_109100342 |
chr12:53972971-53977194 |
Sample_02_1091 |
Mammary gland |
T47D_shCtrl_shRING1B_8hr |
342 |
1 |
99 |
4 | 0 | 164 |
633 |
HOXC11,HOTAIR,HOXC-AS2,HOXC4,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_142100172 |
chr12:53973165-53977066 |
Sample_02_1421 |
Brain |
NHA |
172 |
1 |
92 |
4 | 0 | 143 |
619 |
HOXC11,HOTAIR,HOXC-AS2,HOXC4,HOXC12,HOXC13,HOXC9,MIR196A2,HOXC8,HOXC-AS1,HOXC13-AS,HOXC10,HOXC-AS3 |
| SE_02_125300883 |
chr12:53986250-53998715 |
Sample_02_1253 |
Mammary gland |
CAMA1 ER+/FGFR1-amplified |
883 |
1 |
319 |
16 | 0 | 229 |
309 |
MIR196A2,HOXC-AS2,HOXC10,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC13,HOXC9,HOXC6,HOXC8,HOXC-AS1,HOXC13-AS,HOXC5,HOXC-AS3,MIR615 |
| SE_02_086400247 |
chr12:53988277-54005973 |
Sample_02_0864 |
Malignant rhaboid tumor |
TTC1240_SMARCB1_K364del |
247 |
1 |
455 |
21 | 0 | 421 |
760 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC13,HOXC6,HOXC8,HOXC13-AS,HOXC5,HOXC-AS3,MIR615 |
| SE_02_156600158 |
chr12:53988305-54008781 |
Sample_02_1566 |
Dermal |
Dermal fibroblast |
158 |
1 |
525 |
24 | 0 | 460 |
760 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC13,HOXC6,HOXC8,HOXC13-AS,FLJ12825,HOXC5,HOXC-AS3,MIR615 |
| SE_02_086500266 |
chr12:53988396-54006842 |
Sample_02_0865 |
Malignant rhaboid tumor |
TTC1240_SMARCB1_R377H |
266 |
1 |
472 |
22 | 0 | 441 |
760 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC13,HOXC6,HOXC8,HOXC13-AS,HOXC5,HOXC-AS3,MIR615 |
| SE_02_086600273 |
chr12:53988546-54006069 |
Sample_02_0866 |
Malignant rhaboid tumor |
TTC1240_SMARCB1_delCC |
273 |
1 |
448 |
21 | 0 | 421 |
760 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC13,HOXC6,HOXC8,HOXC13-AS,HOXC5,HOXC-AS3,MIR615 |
| SE_02_079900362 |
chr12:53988922-53998467 |
Sample_02_0799 |
Brain |
MESMN1 |
362 |
4 |
248 |
13 | 0 | 204 |
309 |
MIR196A2,HOXC-AS2,HOXC10,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,HOXC13-AS,MIR615,HOXC-AS3 |
| SE_02_086200274 |
chr12:53989310-54007222 |
Sample_02_0862 |
Malignant rhaboid tumor |
TTC1240_SMARCB1 FL |
274 |
1 |
462 |
22 | 0 | 425 |
707 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC13-AS,MIR615,HOXC-AS3 |
| SE_02_086300304 |
chr12:53989372-54006101 |
Sample_02_0863 |
Malignant rhaboid tumor |
TTC1240_empty |
304 |
1 |
436 |
21 | 0 | 398 |
703 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC13-AS,MIR615,HOXC-AS3 |
| SE_02_067100177 |
chr12:53989478-54001441 |
Sample_02_0671 |
Mammary gland |
breast cancer_DSG |
177 |
1 |
313 |
20 | 0 | 298 |
464 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC13-AS,MIR615,HOXC-AS3 |
| SE_02_095100209 |
chr12:53989556-54002704 |
Sample_02_0951 |
HMSCs |
hMSCs |
209 |
1 |
340 |
20 | 0 | 334 |
525 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC13-AS,MIR615,HOXC-AS3 |
| SE_02_044401017 |
chr12:53990329-54003461 |
Sample_02_0444 |
Bone |
osteosarcoma tumor P10 |
1017 |
1 |
347 |
21 | 0 | 330 |
539 |
MIR196A2,HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC10,MIR615,HOXC-AS3 |
| SE_02_060500380 |
chr12:53990347-54004418 |
Sample_02_0605 |
Skin |
Skin Fibroblast_DMSO |
380 |
1 |
365 |
21 | 0 | 359 |
563 |
MIR196A2,HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC10,MIR615,HOXC-AS3,SMUG1 |
| SE_02_060600378 |
chr12:53990482-54004358 |
Sample_02_0606 |
Skin |
Skin Fibroblast_Nutlin3A |
378 |
1 |
358 |
21 | 0 | 340 |
553 |
MIR196A2,HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC10,MIR615,HOXC-AS3,SMUG1 |
| SE_02_046500052 |
chr12:53990510-54012237 |
Sample_02_0465 |
Adipose |
subcutaneous adipocytes |
52 |
1 |
536 |
24 | 0 | 498 |
1024 |
MIR196A2,HOXC-AS2,HOXC8,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_063500160 |
chr12:53990606-53998640 |
Sample_02_0635 |
Synovial sarcoma |
HSSYII_Untreated |
160 |
1 |
200 |
12 | 0 | 147 |
102 |
MIR196A2,HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,HOXC10,MIR615,HOXC-AS3 |
| SE_02_137300187 |
chr12:53990835-53998219 |
Sample_02_1373 |
Pancreas |
PANC1-untreated |
187 |
1 |
195 |
11 | 0 | 138 |
102 |
MIR196A2,HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,HOXC10,MIR615,HOXC-AS3 |
| SE_02_146400484 |
chr12:53991348-54001407 |
Sample_02_1464 |
Ovary |
CAOV4 |
484 |
1 |
253 |
17 | 0 | 247 |
331 |
MIR196A2,HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC10,MIR615,HOXC-AS3 |
| SE_02_148000164 |
chr12:53991788-54002705 |
Sample_02_1480 |
Bone |
MHH-ES-1 |
164 |
1 |
271 |
17 | 0 | 277 |
358 |
MIR196A2,HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC10,MIR615,HOXC-AS3 |
| SE_02_067000192 |
chr12:53992851-53998734 |
Sample_02_0670 |
Mammary gland |
breast cancer FA |
192 |
1 |
134 |
9 | 0 | 102 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_069800506 |
chr12:53992851-53999472 |
Sample_02_0698 |
Lung |
NCI-H1048-cas9_sgPOU2F3 |
506 |
1 |
147 |
9 | 0 | 114 |
0 |
HOXC-AS2,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_108800398 |
chr12:53992887-54001326 |
Sample_02_1088 |
Mammary gland |
T47D_shCtrl_45min |
398 |
1 |
207 |
15 | 0 | 219 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_109100162 |
chr12:53992902-53998670 |
Sample_02_1091 |
Mammary gland |
T47D_shCtrl_shRING1B_8hr |
162 |
1 |
134 |
9 | 0 | 102 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_136500934 |
chr12:53992967-53998541 |
Sample_02_1365 |
Pancreas |
AsPC1-untreated |
934 |
1 |
132 |
8 | 0 | 102 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_148200223 |
chr12:53992996-54004303 |
Sample_02_1482 |
Bone |
POE |
223 |
1 |
282 |
16 | 0 | 286 |
451 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_124000224 |
chr12:53993017-54001320 |
Sample_02_1240 |
Skin |
MCC13_virus_negative |
224 |
1 |
204 |
15 | 0 | 219 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_063700074 |
chr12:53993030-54006070 |
Sample_02_0637 |
Fibroblast |
fibroblast_WT_GM07492 |
74 |
1 |
325 |
16 | 0 | 316 |
451 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_069700289 |
chr12:53993035-54001767 |
Sample_02_0697 |
Lung |
NCI-H1048-cas9_sgHROSA |
289 |
1 |
220 |
15 | 0 | 237 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_070100498 |
chr12:53993130-53998026 |
Sample_02_0701 |
Bone |
David_TC32 |
498 |
1 |
124 |
7 | 0 | 96 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_078000752 |
chr12:53993132-53999223 |
Sample_02_0780 |
Liver |
SMMC-7721 |
752 |
1 |
137 |
9 | 0 | 110 |
0 |
HOXC-AS2,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_061000623 |
chr12:53993150-54001718 |
Sample_02_0610 |
Liposarcoma |
MLS 1765-92 |
623 |
1 |
215 |
15 | 0 | 236 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_155600589 |
chr12:53993151-53998845 |
Sample_02_1556 |
Gastrointestinal Stromal |
GIST-5_KIT e9 |
589 |
1 |
130 |
9 | 0 | 103 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_135500867 |
chr12:53993193-54001348 |
Sample_02_1355 |
Umbilical cord |
umbilical cord-derived mesenchymal stem cells_old |
867 |
1 |
201 |
15 | 0 | 219 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_111400043 |
chr12:53993205-54002069 |
Sample_02_1114 |
Embryonic kidney |
HEK293 |
43 |
1 |
219 |
15 | 0 | 246 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_108000335 |
chr12:53993208-53998922 |
Sample_02_1080 |
Muscle |
JR1 shCtrl |
335 |
1 |
128 |
9 | 0 | 103 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_081000344 |
chr12:53993227-53998727 |
Sample_02_0810 |
Mammary gland |
T47D noSerum |
344 |
1 |
123 |
9 | 0 | 102 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_135600408 |
chr12:53993236-54008753 |
Sample_02_1356 |
Umbilical cord |
umbilical cord-derived mesenchymal stem cells_Young |
408 |
1 |
386 |
19 | 0 | 355 |
451 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_129000396 |
chr12:53993514-54001397 |
Sample_02_1290 |
Lung |
NCI-H69_p8-15 |
396 |
1 |
191 |
14 | 0 | 214 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_128001059 |
chr12:53993936-54001133 |
Sample_02_1280 |
Bone |
Mesenchymal stem cells_SPC_mutation_ EF1 |
1059 |
1 |
174 |
11 | 0 | 195 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_088401046 |
chr12:53993961-53998978 |
Sample_02_0884 |
Colon |
LoVo |
1046 |
1 |
110 |
7 | 0 | 81 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_126900981 |
chr12:53993967-53998721 |
Sample_02_1269 |
Bone |
Im-GCT-4072_G34W-repair_WT_A4 |
981 |
1 |
106 |
7 | 0 | 80 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_058400230 |
chr12:53993973-54002487 |
Sample_02_0584 |
Lung |
H1299 WT |
230 |
1 |
208 |
13 | 0 | 233 |
275 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_127901464 |
chr12:53993996-54001493 |
Sample_02_1279 |
Bone |
Mesenchymal stem cells |
1464 |
1 |
185 |
13 | 0 | 197 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_103602749 |
chr12:53994014-53995188 |
Sample_02_1036 |
Mammary gland |
HCC70_XY018 |
2749 |
1 |
23 |
4 | 0 | 25 |
0 |
HOXC12,HOTAIR,HOXC4,HOXC11,HOXC-AS2,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_01_010200375 |
chr12:53994021-53998715 |
Sample_01_0102 |
Artery |
tibial artery |
375 |
1 |
106 |
7 | 0 | 79 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_120200535 |
chr12:53994024-54002919 |
Sample_02_1202 |
Brain |
GBM38 |
535 |
1 |
221 |
13 | 0 | 242 |
341 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_119800832 |
chr12:53994026-53998942 |
Sample_02_1198 |
Brain |
GBM34 |
832 |
1 |
108 |
7 | 0 | 79 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_126001079 |
chr12:53994140-53998279 |
Sample_02_1260 |
Bone |
Im-GCT-3504_G34W-repair_4F5 |
1079 |
1 |
99 |
5 | 0 | 75 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_107800424 |
chr12:53994274-53999497 |
Sample_02_1078 |
Muscle |
RMS235_PAX3-NCOA1 |
424 |
2 |
111 |
5 | 0 | 86 |
0 |
HOXC-AS2,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_132201480 |
chr12:53994556-53996791 |
Sample_02_1322 |
Connective Tissue |
HT1080_WT |
1480 |
1 |
59 |
3 | 0 | 53 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_01_011200475 |
chr12:53994814-53999462 |
Sample_01_0112 |
Embryonic kidney |
HEK293_encode |
475 |
1 |
102 |
3 | 0 | 75 |
0 |
HOXC-AS2,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_069600053 |
chr12:53999562-54011873 |
Sample_02_0696 |
Lung |
COR-L311 |
53 |
1 |
314 |
10 | 0 | 328 |
851 |
HOXC8,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC-AS2,HOXC5,HOXC6,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_069200033 |
chr12:53999573-54017910 |
Sample_02_0692 |
Lung |
NCI-H526_no infection |
33 |
1 |
436 |
14 | 0 | 448 |
1141 |
HOXC9,HOXC8,HOXC4,HOXC5,HOXC-AS1,HOXC6,HOXC12,HOTAIR,HOXC11,HOXC-AS2,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_120200373 |
chr12:54003098-54012253 |
Sample_02_1202 |
Brain |
GBM38 |
373 |
1 |
211 |
4 | 0 | 179 |
558 |
HOXC8,HOXC9,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC-AS2,HOXC5,HOXC6,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_135500139 |
chr12:54004397-54021813 |
Sample_02_1355 |
Umbilical cord |
umbilical cord-derived mesenchymal stem cells_old |
139 |
1 |
375 |
10 | 0 | 359 |
690 |
HOXC4,HOXC8,HOXC5,HOXC6,HOXC12,HOTAIR,HOXC11,HOXC-AS2,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,HOXC9,MIR615,HOXC-AS3 |
| SE_02_144400222 |
chr12:54004873-54027408 |
Sample_02_1444 |
Adipose |
SW872_Empty Vector |
222 |
6 |
506 |
26 | 1 | 470 |
690 |
HOXC4,HOXC8,HOXC5,HOXC6,HOXC12,HOTAIR,HOXC11,HOXC-AS2,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,HOXC9,MIR615,HOXC-AS3 |
| SE_02_144800096 |
chr12:54004935-54027879 |
Sample_02_1448 |
Adipose |
SW872_YAP5SA |
96 |
5 |
520 |
28 | 1 | 474 |
690 |
HOXC4,HOXC8,HOXC5,HOXC6,HOXC-AS2,HOTAIR,HOXC11,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_144900472 |
chr12:54005158-54027493 |
Sample_02_1449 |
Adipose |
SW872_YAP_TFE3 |
472 |
5 |
502 |
27 | 1 | 468 |
690 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_063700375 |
chr12:54006197-54012236 |
Sample_02_0637 |
Fibroblast |
fibroblast_WT_GM07492 |
375 |
1 |
133 |
3 | 0 | 130 |
471 |
HOXC8,HOTAIR,HOXC4,HOXC11,HOXC-AS2,HOXC5,HOXC6,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_045300738 |
chr12:54006227-54026398 |
Sample_02_0453 |
Neuroblastoma |
SJNB3 |
738 |
7 |
455 |
24 | 1 | 436 |
690 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_058400031 |
chr12:54007372-54022467 |
Sample_02_0584 |
Lung |
H1299 WT |
31 |
1 |
318 |
9 | 0 | 336 |
690 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_082500280 |
chr12:54007508-54024686 |
Sample_02_0825 |
Stomach |
SNU484 |
280 |
1 |
384 |
17 | 1 | 364 |
690 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_01_009700294 |
chr12:54007644-54032231 |
Sample_01_0097 |
Gastrocnemius medialis |
gastrocnemius medialis_53y |
294 |
1 |
570 |
31 | 1 | 576 |
1143 |
HOXC6,HOXC4,HOXC8,HOXC5,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,HOXC-AS3,MIR615,LOC100240735 |
| SE_02_086300332 |
chr12:54007882-54022274 |
Sample_02_0863 |
Malignant rhaboid tumor |
TTC1240_empty |
332 |
1 |
293 |
7 | 0 | 334 |
690 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_086200313 |
chr12:54008422-54021818 |
Sample_02_0862 |
Malignant rhaboid tumor |
TTC1240_SMARCB1 FL |
313 |
1 |
271 |
7 | 0 | 313 |
690 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_045200922 |
chr12:54008458-54026737 |
Sample_02_0452 |
Skin |
hTERT immortalised human skin fibroblasts_Non-tumourigenic |
922 |
4 |
404 |
21 | 1 | 406 |
690 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_068300276 |
chr12:54008834-54022661 |
Sample_02_0683 |
Lung |
DMS114 |
276 |
1 |
282 |
7 | 0 | 332 |
690 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3,SMUG1 |
| SE_02_156600564 |
chr12:54008888-54016654 |
Sample_02_1566 |
Dermal |
Dermal fibroblast |
564 |
1 |
166 |
4 | 0 | 155 |
532 |
HOXC8,HOTAIR,HOXC4,HOXC11,HOXC-AS2,HOXC5,HOXC6,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_086400288 |
chr12:54008912-54022469 |
Sample_02_0864 |
Malignant rhaboid tumor |
TTC1240_SMARCB1_K364del |
288 |
1 |
279 |
7 | 0 | 318 |
690 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_086500312 |
chr12:54008931-54021707 |
Sample_02_0865 |
Malignant rhaboid tumor |
TTC1240_SMARCB1_R377H |
312 |
1 |
260 |
7 | 0 | 294 |
688 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_133500113 |
chr12:54008966-54021987 |
Sample_02_1335 |
Lung |
NCI-H1299_wtSMARCA4_Dox |
113 |
5 |
264 |
7 | 0 | 309 |
679 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_086600355 |
chr12:54008970-54020480 |
Sample_02_0866 |
Malignant rhaboid tumor |
TTC1240_SMARCB1_delCC |
355 |
1 |
235 |
6 | 0 | 286 |
679 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_148100026 |
chr12:54008997-54029365 |
Sample_02_1481 |
Bone |
MIC |
26 |
1 |
474 |
26 | 1 | 481 |
817 |
HOXC6,HOXC4,HOXC8,HOXC5,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_146200081 |
chr12:54009045-54032482 |
Sample_02_1462 |
Ovary |
A2780_shMBD3.26 |
81 |
1 |
541 |
30 | 1 | 556 |
1122 |
HOXC6,HOXC4,HOXC8,HOXC5,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,HOXC-AS3,MIR615,LOC100240735 |
| SE_02_135600172 |
chr12:54009061-54022007 |
Sample_02_1356 |
Umbilical cord |
umbilical cord-derived mesenchymal stem cells_Young |
172 |
1 |
266 |
7 | 0 | 309 |
664 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_146300097 |
chr12:54009227-54032668 |
Sample_02_1463 |
Ovary |
A2780_shMBD3.232 |
97 |
1 |
538 |
30 | 1 | 549 |
1049 |
HOXC6,HOXC4,HOXC8,HOXC5,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,HOXC-AS3,MIR615,LOC100240735 |
| SE_02_157100983 |
chr12:54009233-54017987 |
Sample_02_1571 |
Fibroblast |
Fibroblast cells |
983 |
1 |
183 |
4 | 0 | 198 |
593 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_088300329 |
chr12:54009237-54032658 |
Sample_02_0883 |
Ovary |
SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W |
329 |
3 |
538 |
30 | 1 | 549 |
1044 |
HOXC6,HOXC4,HOXC8,HOXC5,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,HOXC-AS3,MIR615,LOC100240735,CBX5,HOXC13,HOXC12 |
| SE_02_088000280 |
chr12:54009250-54032668 |
Sample_02_0880 |
Ovary |
SVOG3e cells_noDox_transduced_V5-FOXL2_WT |
280 |
5 |
537 |
30 | 1 | 548 |
1039 |
HOXC6,HOXC4,HOXC8,HOXC5,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,HOXC-AS3,MIR615,LOC100240735,CBX5,HOXC13,HOXC12 |
| SE_02_063100444 |
chr12:54010783-54025058 |
Sample_02_0631 |
Gastrointestinal Stromal |
GIST-T1_JQ1 |
444 |
4 |
309 |
15 | 1 | 290 |
446 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_054900138 |
chr12:54010871-54031305 |
Sample_02_0549 |
Other |
Aska shCt |
138 |
8 |
468 |
30 | 1 | 496 |
899 |
HOXC6,HOXC4,HOXC8,HOXC5,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_158401148 |
chr12:54011021-54020611 |
Sample_02_1584 |
Brain |
U87 GBM_Mock |
1148 |
3 |
195 |
6 | 0 | 229 |
417 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_133800334 |
chr12:54011473-54022262 |
Sample_02_1338 |
Esophagus |
KYSE180 |
334 |
5 |
216 |
7 | 0 | 240 |
351 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_063700381 |
chr12:54012323-54017998 |
Sample_02_0637 |
Fibroblast |
fibroblast_WT_GM07492 |
381 |
1 |
123 |
4 | 0 | 120 |
213 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_061100140 |
chr12:54012387-54022563 |
Sample_02_0611 |
Liposarcoma |
DDLPS_T1 |
140 |
1 |
208 |
7 | 0 | 229 |
211 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_120200077 |
chr12:54012661-54032221 |
Sample_02_1202 |
Brain |
GBM38 |
77 |
1 |
457 |
30 | 1 | 454 |
650 |
HOXC6,HOXC4,HOXC8,HOXC5,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,HOXC-AS3,MIR615,LOC100240735 |
| SE_02_148000376 |
chr12:54012747-54022334 |
Sample_02_1480 |
Bone |
MHH-ES-1 |
376 |
1 |
189 |
6 | 0 | 206 |
189 |
HOXC4,HOXC8,HOXC5,HOXC6,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_144500529 |
chr12:54012768-54030237 |
Sample_02_1445 |
Adipose |
SW872_TAZ4SA |
529 |
1 |
405 |
25 | 1 | 407 |
467 |
HOXC6,HOXC4,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_128000697 |
chr12:54012791-54022359 |
Sample_02_1280 |
Bone |
Mesenchymal stem cells_SPC_mutation_ EF1 |
697 |
1 |
189 |
6 | 0 | 206 |
188 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_055300437 |
chr12:54012801-54023451 |
Sample_02_0553 |
Other |
HSSY2 shCt |
437 |
1 |
215 |
6 | 0 | 223 |
187 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_126401337 |
chr12:54012823-54021838 |
Sample_02_1264 |
Bone |
Im-GCT-4072_G34W KO |
1337 |
4 |
178 |
6 | 0 | 196 |
184 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_143300747 |
chr12:54012829-54026607 |
Sample_02_1433 |
Bone |
A673 STAG2 null |
747 |
10 |
309 |
20 | 1 | 284 |
183 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_061500508 |
chr12:54012835-54026016 |
Sample_02_0615 |
Liposarcoma |
liposarcoma cells_MLS402 |
508 |
4 |
295 |
18 | 1 | 267 |
180 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_126900931 |
chr12:54013082-54020438 |
Sample_02_1269 |
Bone |
Im-GCT-4072_G34W-repair_WT_A4 |
931 |
2 |
145 |
5 | 0 | 177 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_132100806 |
chr12:54013358-54020505 |
Sample_02_1321 |
Connective Tissue |
HT1080_FUS-DDIT3 |
806 |
2 |
141 |
5 | 0 | 178 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_138000664 |
chr12:54014076-54031975 |
Sample_02_1380 |
Pancreas |
Pancreatic_tumor_associated_fibroblasts_CW1_untreated |
664 |
8 |
419 |
26 | 1 | 445 |
611 |
HOXC6,HOXC4,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,HOXC-AS3,MIR615,LOC100240735 |
| SE_02_143200691 |
chr12:54014104-54031062 |
Sample_02_1432 |
Bone |
A673 STAG2 WT |
691 |
6 |
391 |
24 | 1 | 439 |
611 |
HOXC6,HOXC4,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_113600894 |
chr12:54014106-54021905 |
Sample_02_1136 |
Bone |
U2OS-anaphase/telophase |
894 |
4 |
149 |
3 | 0 | 200 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_133400402 |
chr12:54014117-54022061 |
Sample_02_1334 |
Lung |
NCI-H1299_mutSMARCA4 |
402 |
4 |
152 |
3 | 0 | 203 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_096300663 |
chr12:54014141-54025882 |
Sample_02_0963 |
Brain |
H3.3K27M_Tumor-derived cell-line_G477p6_cells |
663 |
3 |
260 |
15 | 1 | 264 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_110500863 |
chr12:54014144-54022202 |
Sample_02_1105 |
Brain |
NBL-S |
863 |
1 |
154 |
3 | 0 | 204 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_110900418 |
chr12:54014238-54022308 |
Sample_02_1109 |
Brain |
SK-N-FI |
418 |
2 |
152 |
3 | 0 | 205 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_147500488 |
chr12:54014238-54028129 |
Sample_02_1475 |
Bone |
CHLA-25 |
488 |
1 |
316 |
22 | 1 | 305 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_148700121 |
chr12:54014249-54026618 |
Sample_02_1487 |
Bone |
TC-32 |
121 |
7 |
274 |
17 | 1 | 283 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_148200079 |
chr12:54015040-54029345 |
Sample_02_1482 |
Bone |
POE |
79 |
1 |
337 |
22 | 1 | 346 |
296 |
HOXC6,HOXC4,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_147800386 |
chr12:54015096-54028207 |
Sample_02_1478 |
Bone |
EW-3 |
386 |
1 |
298 |
22 | 1 | 279 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_110400571 |
chr12:54015162-54022530 |
Sample_02_1104 |
Brain |
NB-69 |
571 |
1 |
138 |
3 | 0 | 178 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_144700483 |
chr12:54015317-54023160 |
Sample_02_1447 |
Adipose |
SW872_CAMTA1 |
483 |
1 |
149 |
3 | 0 | 192 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_081900907 |
chr12:54015369-54022273 |
Sample_02_0819 |
Ovary |
Mucinous ovarian cancer |
907 |
1 |
127 |
3 | 0 | 175 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_147600400 |
chr12:54015526-54028136 |
Sample_02_1476 |
Bone |
EW-1 |
400 |
1 |
290 |
22 | 1 | 272 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_066300439 |
chr12:54015548-54025182 |
Sample_02_0663 |
Thyroid |
TT |
439 |
1 |
207 |
14 | 1 | 207 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_147900355 |
chr12:54015626-54022602 |
Sample_02_1479 |
Bone |
EW-7 |
355 |
1 |
129 |
3 | 0 | 180 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_064200675 |
chr12:54015628-54022291 |
Sample_02_0642 |
Mammary gland |
MDA-MB-436_20C paclitaxel |
675 |
1 |
123 |
3 | 0 | 172 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_124000550 |
chr12:54015645-54021552 |
Sample_02_1240 |
Skin |
MCC13_virus_negative |
550 |
1 |
108 |
3 | 0 | 149 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_061400055 |
chr12:54015647-54032761 |
Sample_02_0614 |
Liposarcoma |
MLPS_T2 |
55 |
1 |
401 |
27 | 2 | 415 |
611 |
HOXC6,HOXC4,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,HOXC-AS3,MIR615,LOC100240735 |
| SE_02_064000628 |
chr12:54015702-54022246 |
Sample_02_0640 |
Mammary gland |
MDA-MB-436_DMSO |
628 |
1 |
120 |
3 | 0 | 171 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_088200646 |
chr12:54015706-54026651 |
Sample_02_0882 |
Ovary |
SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W |
646 |
1 |
245 |
17 | 1 | 250 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_064300484 |
chr12:54015736-54022336 |
Sample_02_0643 |
Mammary gland |
MDA-MB-436 |
484 |
1 |
122 |
3 | 0 | 172 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_148500208 |
chr12:54015751-54029299 |
Sample_02_1485 |
Bone |
SK-ES-1 |
208 |
1 |
321 |
22 | 1 | 336 |
296 |
HOXC6,HOXC4,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_046500180 |
chr12:54015836-54028281 |
Sample_02_0465 |
Adipose |
subcutaneous adipocytes |
180 |
1 |
286 |
22 | 1 | 273 |
167 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3,CBX5,SMUG1 |
| SE_02_087800791 |
chr12:54015842-54026793 |
Sample_02_0878 |
Ovary |
SVOG3e cells_noDox_control |
791 |
1 |
244 |
17 | 1 | 252 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_132200516 |
chr12:54015970-54020536 |
Sample_02_1322 |
Connective Tissue |
HT1080_WT |
516 |
1 |
78 |
2 | 0 | 144 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_047900831 |
chr12:54015971-54026419 |
Sample_02_0479 |
Head and neck |
SCC25 |
831 |
3 |
233 |
17 | 1 | 250 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_124600533 |
chr12:54015994-54022091 |
Sample_02_1246 |
Brain |
LAN5_ATRA |
533 |
1 |
108 |
3 | 0 | 170 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_123500453 |
chr12:54016039-54022264 |
Sample_02_1235 |
Brain |
Neuroblastoma PDX tumour cells |
453 |
1 |
111 |
3 | 0 | 172 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_102000431 |
chr12:54016057-54020408 |
Sample_02_1020 |
Mammary gland |
SUM159 |
431 |
1 |
75 |
2 | 0 | 143 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_132000577 |
chr12:54016078-54020506 |
Sample_02_1320 |
Connective Tissue |
HT1080_EWS-FLI1 |
577 |
1 |
77 |
2 | 0 | 144 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_125901112 |
chr12:54016128-54020056 |
Sample_02_1259 |
Bone |
Im-GCT-3504_G34W-repair_WT_4C7 |
1112 |
1 |
68 |
0 | 0 | 137 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_114900516 |
chr12:54016165-54020162 |
Sample_02_1149 |
Kidney |
WT 9-12_control_Nrf2_SFN |
516 |
1 |
71 |
0 | 0 | 137 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_107300759 |
chr12:54016231-54026182 |
Sample_02_1073 |
Keratinocyte |
keratinocytes stem cell |
759 |
4 |
226 |
16 | 1 | 238 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_126100675 |
chr12:54016356-54020199 |
Sample_02_1261 |
Bone |
Im-GCT-3504_G34W_unedited |
675 |
1 |
72 |
0 | 0 | 138 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_126200536 |
chr12:54016358-54019831 |
Sample_02_1262 |
Bone |
Im-GCT-3504_G34W |
536 |
1 |
61 |
0 | 0 | 130 |
158 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_156600253 |
chr12:54016710-54036030 |
Sample_02_1566 |
Dermal |
Dermal fibroblast |
253 |
1 |
475 |
32 | 3 | 531 |
1168 |
HOXC6,HOXC4,HOXC5,MIR615,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,HOXC-AS3,LOC100240735 |
| SE_02_087901104 |
chr12:54016781-54026766 |
Sample_02_0879 |
Ovary |
SVOG3e cells_Dox_12h_control |
1104 |
1 |
232 |
17 | 1 | 229 |
145 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_01_011200182 |
chr12:54016816-54020435 |
Sample_01_0112 |
Embryonic kidney |
HEK293_encode |
182 |
1 |
70 |
2 | 0 | 117 |
141 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3,CBX5,SMUG1,HOXC13 |
| SE_02_068500702 |
chr12:54016852-54022796 |
Sample_02_0685 |
Lung |
NCI-H1048_no infection |
702 |
1 |
115 |
3 | 0 | 157 |
138 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_063801069 |
chr12:54016855-54020557 |
Sample_02_0638 |
Fibroblast |
HGPS fibroblast_LMNA_AG11498 |
1069 |
1 |
72 |
2 | 0 | 116 |
138 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_088100931 |
chr12:54016868-54026662 |
Sample_02_0881 |
Ovary |
SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT |
931 |
1 |
229 |
17 | 1 | 221 |
138 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_126000866 |
chr12:54016969-54020126 |
Sample_02_1260 |
Bone |
Im-GCT-3504_G34W-repair_4F5 |
866 |
1 |
64 |
0 | 0 | 106 |
120 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_01_010600292 |
chr12:54017353-54031876 |
Sample_01_0106 |
Adrenal gland |
adrenal gland 54y |
292 |
5 |
360 |
26 | 1 | 371 |
499 |
HOXC6,HOXC4,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,HOXC-AS3,MIR615,LOC100240735 |
| SE_02_063700630 |
chr12:54018082-54022437 |
Sample_02_0637 |
Fibroblast |
fibroblast_WT_GM07492 |
630 |
1 |
86 |
3 | 0 | 87 |
0 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_108000558 |
chr12:54018098-54022189 |
Sample_02_1080 |
Muscle |
JR1 shCtrl |
558 |
1 |
78 |
3 | 0 | 84 |
0 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_148300465 |
chr12:54018117-54026871 |
Sample_02_1483 |
Bone |
RD-ES |
465 |
2 |
209 |
17 | 1 | 170 |
0 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_069200067 |
chr12:54018150-54032697 |
Sample_02_0692 |
Lung |
NCI-H526_no infection |
67 |
1 |
352 |
26 | 1 | 325 |
453 |
HOXC6,HOXC4,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,HOXC-AS3,MIR615,LOC100240735 |
| SE_02_148600392 |
chr12:54018153-54026877 |
Sample_02_1486 |
Bone |
SK-N-MC |
392 |
1 |
208 |
17 | 1 | 170 |
0 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_148900240 |
chr12:54018211-54025981 |
Sample_02_1489 |
Bone |
TC-106 |
240 |
5 |
186 |
15 | 1 | 139 |
0 |
HOXC4,HOXC6,HOXC5,HOXC8,HOTAIR,HOXC11,HOXC-AS2,HOXC9,HOXC-AS1,MIR196A2,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_069600038 |
chr12:54019201-54032664 |
Sample_02_0696 |
Lung |
COR-L311 |
38 |
1 |
335 |
26 | 1 | 303 |
453 |
HOXC6,HOXC4,HOXC5,HOXC-AS2,HOXC11,HOXC8,HOXC9,HOXC-AS1,MIR196A2,HOTAIR,FLJ12825,HOXC10,HOXC-AS3,MIR615,LOC100240735 |
| SE_02_106000670 |
chr12:54019227-54026825 |
Sample_02_1060 |
Bone |
TC71_SA2 KO |
670 |
1 |
188 |
17 | 1 | 141 |
0 |
HOXC4,HOXC6,HOXC5,HOXC-AS2,HOXC11,HOXC8,HOXC9,HOXC-AS1,MIR196A2,HOTAIR,FLJ12825,HOXC10,MIR615,HOXC-AS3 |
| SE_02_061100067 |
chr12:54022615-54040241 |
Sample_02_0611 |
Liposarcoma |
DDLPS_T1 |
67 |
1 |
461 |
34 | 3 | 426 |
1018 |
HOXC6,HOXC4,HOXC5,MIR615,HOXC-AS2,HOXC11,HOXC8,HOXC9,HOXC-AS1,MIR196A2,HOTAIR,FLJ12825,HOXC10,HOXC-AS3,LOC100240735 |
| SE_02_046500911 |
chr12:54028423-54032695 |
Sample_02_0465 |
Adipose |
subcutaneous adipocytes |
911 |
1 |
103 |
4 | 0 | 134 |
425 |
HOXC6,HOXC4,HOXC5,HOXC-AS2,HOXC8,HOXC10,HOXC-AS1,MIR196A2,HOXC9,HOXC-AS3,MIR615,FLJ12825,LOC100240735 |
| SE_01_011200040 |
chr12:54032185-54040582 |
Sample_01_0112 |
Embryonic kidney |
HEK293_encode |
40 |
1 |
213 |
12 | 2 | 199 |
565 |
HOXC4,MIR615,HOXC5,HOXC-AS2,HOXC6,HOXC8,HOXC10,HOXC-AS1,MIR196A2,HOXC9,HOXC-AS3,FLJ12825,LOC100240735 |
| SE_02_081900474 |
chr12:54032294-54040881 |
Sample_02_0819 |
Ovary |
Mucinous ovarian cancer |
474 |
1 |
218 |
13 | 2 | 200 |
565 |
HOXC4,MIR615,HOXC5,HOXC-AS2,HOXC6,HOXC8,HOXC10,HOXC-AS1,MIR196A2,HOXC9,HOXC-AS3,FLJ12825,LOC100240735 |
| SE_02_148100852 |
chr12:54033081-54040100 |
Sample_02_1481 |
Bone |
MIC |
852 |
1 |
179 |
10 | 1 | 168 |
534 |
HOXC4,MIR615,HOXC5,HOXC-AS2,HOXC6,HOXC8,HOXC10,HOXC-AS1,MIR196A2,HOXC9,HOXC-AS3,FLJ12825,LOC100240735 |
| SE_02_111400122 |
chr12:54035431-54040138 |
Sample_02_1114 |
Embryonic kidney |
HEK293 |
122 |
1 |
111 |
6 | 0 | 58 |
20 |
HOXC4,HOXC-AS2,HOXC6,HOXC8,HOXC5,MIR196A2,HOXC-AS1,HOXC-AS3,HOXC9,MIR615,FLJ12825,LOC100240735 |
