SEdb 2.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_120200535
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Tissue
Tissue type: Brain
Biosample name: GBM38
Genomic region: chr12:53994024-54002919
Size: 8895
Super-enhancer rank 535
Number of SE elements: 1
ChIP density(Case|Control): 23263.0935|916.185
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HOXC-AS1;
ROSE Overlap HOXC-AS2; HOXC9; HOXC-AS1;
ROSE Proximal HOXC12; HOTAIR; HOXC4; HOXC11; HOXC5; HOXC6; HOXC8; MIR196A2; HOXC10; MIR615; HOXC-AS3;
ROSE Closest HOXC-AS1;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_120200535 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers