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Super-enhancer overview

SE ID: SE_02_109100162
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: T47D_shCtrl_shRING1B_8hr
Genomic region: chr12:53992902-53998670
Size: 5768
Super-enhancer rank 162
Number of SE elements: 1
ChIP density(Case|Control): 23177.5544|758.492
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HOXC-AS2;
ROSE Overlap HOXC-AS2;
ROSE Proximal HOXC12; HOTAIR; HOXC4; HOXC11; HOXC5; HOXC9; HOXC6; HOXC8; HOXC-AS1; MIR196A2; HOXC10; MIR615; HOXC-AS3;
ROSE Closest HOXC-AS2;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_109100162 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers