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Super-enhancer overview

SE ID: SE_02_148900240
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Bone
Biosample name: TC-106
Genomic region: chr12:54018211-54025981
Size: 7770
Super-enhancer rank 240
Number of SE elements: 5
ChIP density(Case|Control): 36781.626|4709.397
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HOXC4;
ROSE Overlap HOXC4; HOXC6; HOXC5;
ROSE Proximal HOXC8; HOTAIR; HOXC4; HOXC11; HOXC-AS2; HOXC5; HOXC6; HOXC9; HOXC-AS1; MIR196A2; FLJ12825; HOXC10; MIR615; HOXC-AS3;
ROSE Closest HOXC4;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_148900240 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers