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Super-enhancer overview

SE ID: SE_02_063400327
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-48B_JQ1
Genomic region: chr12:53962697-53970484
Size: 7787
Super-enhancer rank 327
Number of SE elements: 1
ChIP density(Case|Control): 16897.79|865.9144
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HOTAIR;
ROSE Overlap HOTAIR;
ROSE Proximal HOXC-AS2; HOXC4; HOXC11; HOXC12; HOXC13; HOXC9; MIR196A2; HOXC8; HOXC-AS1; HOXC13-AS; HOXC10; HOXC-AS3;
ROSE Closest HOTAIR;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_063400327 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers