SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000215915
Gene: ATAD3C Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:1449689-1470163 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_021601491 chr1:1392971-1405564 Sample_02_0216 Skin NHEK_scramble 1491 2 453 35 0 46 1094 CCNL2,MRPL20,LOC148413,AURKAIP1,TMEM88B,VWA1,ATAD3C,LOC441869,MXRA8,DVL1
SE_02_004700442 chr1:1397017-1439182 Sample_02_0047 Pancreatic endoderm IIDP/donor790 442 6 1515 139 1 139 2897 CCNL2,MRPL20,TMEM88B,VWA1,LOC148413,LOC441869,AURKAIP1,ATAD3B,ATAD3C,MXRA8,DVL1
SE_02_003200084 chr1:1397416-1442915 Sample_02_0032 Pancreas pancreatic-islets-M 84 12 1651 151 1 157 3816 CCNL2,MRPL20,TMEM88B,VWA1,LOC148413,LOC441869,AURKAIP1,ATAD3B,ATAD3C,MXRA8,DVL1
SE_02_039601761 chr1:1397499-1402056 Sample_02_0396 Skin NHEK-D 1761 1 168 15 0 15 785 CCNL2,MRPL20,LOC148413,AURKAIP1,TMEM88B,VWA1,ATAD3C,LOC441869,MXRA8,DVL1
SE_00_002200248 chr1:1397778-1442563 Sample_00_0022 Lung lung_30y 248 6 1618 147 1 157 3758 CCNL2,MRPL20,TMEM88B,VWA1,LOC148413,LOC441869,AURKAIP1,ATAD3B,ATAD3C,MXRA8,DVL1
SE_00_003400788 chr1:1397826-1436797 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 788 4 1394 131 1 104 2613 CCNL2,MRPL20,TMEM88B,VWA1,LOC148413,LOC441869,AURKAIP1,ATAD3B,ATAD3C,MXRA8,DVL1
SE_02_003300792 chr1:1397880-1438947 Sample_02_0033 Pancreas pancreatic-islets-F 792 6 1466 137 1 139 2838 CCNL2,MRPL20,TMEM88B,VWA1,LOC148413,LOC441869,AURKAIP1,ATAD3B,ATAD3C,MXRA8,DVL1
SE_02_003600220 chr1:1398188-1435800 Sample_02_0036 Embryo H7 220 10 1360 127 1 100 2526 CCNL2,MRPL20,TMEM88B,VWA1,LOC148413,LOC441869,AURKAIP1,ATAD3B,ATAD3C,MXRA8,DVL1
SE_00_004100243 chr1:1398241-1437078 Sample_00_0041 Stomach stomach_3y 243 5 1380 128 1 112 2672 CCNL2,MRPL20,TMEM88B,VWA1,LOC148413,LOC441869,AURKAIP1,ATAD3B,ATAD3C,MXRA8,DVL1
SE_00_001100385 chr1:1398257-1436473 Sample_00_0011 Esophagus esophagus 385 5 1365 128 1 104 2584 CCNL2,MRPL20,TMEM88B,VWA1,LOC148413,LOC441869,AURKAIP1,ATAD3B,ATAD3C,MXRA8,DVL1
SE_00_004200270 chr1:1398365-1438609 Sample_00_0042 Stomach stomach_30y 270 6 1430 132 1 137 2789 CCNL2,MRPL20,TMEM88B,VWA1,LOC148413,LOC441869,AURKAIP1,ATAD3B,ATAD3C,MXRA8,DVL1
SE_02_003800844 chr1:1398399-1435705 Sample_02_0038 Embryo DE 844 8 1351 126 1 98 2475 CCNL2,MRPL20,TMEM88B,VWA1,LOC148413,LOC441869,AURKAIP1,ATAD3B,ATAD3C,MXRA8,DVL1
SE_00_002400069 chr1:1398436-1435857 Sample_00_0024 Embryo mesendoderm 69 7 1352 126 1 101 2506 CCNL2,MRPL20,TMEM88B,VWA1,LOC148413,LOC441869,AURKAIP1,ATAD3B,ATAD3C,MXRA8,DVL1
SE_02_001700092 chr1:1398442-1441919 Sample_02_0017 Embryo H9_ESC 92 9 1564 143 1 156 3573 CCNL2,MRPL20,TMEM88B,VWA1,LOC148413,LOC441869,AURKAIP1,ATAD3B,ATAD3C,MXRA8,DVL1
SE_00_004000964 chr1:1398565-1435626 Sample_00_0040 Spleen spleen_30y 964 4 1345 126 1 98 2418 CCNL2,MRPL20,TMEM88B,VWA1,LOC148413,LOC441869,AURKAIP1,ATAD3B,ATAD3C,MXRA8,DVL1
SE_02_004600240 chr1:1399425-1438960 Sample_02_0046 Embryo endodermal CyT49_ES_D10 240 6 1399 133 1 127 2558 MRPL20,LOC441869,TMEM88B,VWA1,LOC148413,AURKAIP1,ATAD3B,MXRA8,ATAD3C,CCNL2
SE_00_003500706 chr1:1399434-1435932 Sample_00_0035 Sigmoid colon sigmoid-colon 706 4 1310 125 1 90 2298 MRPL20,LOC441869,TMEM88B,VWA1,LOC148413,AURKAIP1,ATAD3B,MXRA8,ATAD3C,CCNL2
SE_02_003900590 chr1:1399435-1434735 Sample_02_0039 Embryo AFG 590 9 1280 125 1 86 2139 MRPL20,LOC441869,TMEM88B,LOC148413,AURKAIP1,ATAD3B,VWA1,MXRA8,ATAD3C,CCNL2
SE_00_004300152 chr1:1399448-1438807 Sample_00_0043 Stomach stomach_96d 152 8 1394 132 1 126 2539 MRPL20,LOC441869,TMEM88B,VWA1,LOC148413,AURKAIP1,ATAD3B,MXRA8,ATAD3C,CCNL2
SE_02_001900185 chr1:1399459-1441296 Sample_02_0019 Embryo Neural crest cells 185 10 1489 141 1 145 3184 MRPL20,LOC441869,TMEM88B,VWA1,LOC148413,AURKAIP1,ATAD3B,MXRA8,ATAD3C,CCNL2
SE_00_002500375 chr1:1399492-1435660 Sample_00_0025 Muscle of leg muscle-of-leg 375 6 1307 125 1 86 2212 MRPL20,LOC441869,TMEM88B,VWA1,LOC148413,AURKAIP1,ATAD3B,MXRA8,ATAD3C,CCNL2
SE_01_003300203 chr1:1401909-1411744 Sample_01_0033 Embryo H9 203 3 391 29 0 12 422 MRPL20,LOC148413,AURKAIP1,TMEM88B,VWA1,LOC441869,MXRA8,ATAD3C,CCNL2
SE_02_156701300 chr1:1402311-1411919 Sample_02_1567 iPSCs CiPSC 1300 2 376 29 0 5 373 MRPL20,AURKAIP1,MXRA8,VWA1,ANKRD65,ATAD3C,LOC148413,CCNL2,LOC102724312,TMEM88B
SE_02_138700093 chr1:1405168-1427482 Sample_02_1387 Peripheral blood Mac-1_ALK- 93 1 833 82 0 35 1339 MRPL20,TMEM88B,ANKRD65,AURKAIP1,MXRA8,VWA1,ATAD3B,ATAD3C,LOC148413,CCNL2,LOC102724312
SE_02_139100222 chr1:1405658-1420142 Sample_02_1391 Peripheral blood FE-PD_ALK- 222 1 554 47 0 8 620 MRPL20,ANKRD65,AURKAIP1,MXRA8,VWA1,ATAD3C,LOC148413,CCNL2,LOC102724312,TMEM88B
SE_02_012400784 chr1:1405945-1410376 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 784 1 185 11 0 3 177 MRPL20,AURKAIP1,TMEM88B,VWA1,LOC441869,MXRA8,ATAD3C,LOC148413,CCNL2
SE_02_139200197 chr1:1405974-1422905 Sample_02_1392 Peripheral blood Mac-2A_ALK- 197 1 623 55 0 22 1002 MRPL20,ANKRD65,AURKAIP1,MXRA8,VWA1,ATAD3B,ATAD3C,LOC148413,CCNL2,LOC102724312,TMEM88B
SE_02_012500691 chr1:1406146-1412056 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 691 2 249 18 0 3 167 MRPL20,AURKAIP1,TMEM88B,VWA1,LOC441869,MXRA8,ATAD3C,LOC148413,CCNL2
SE_02_055500614 chr1:1406293-1412410 Sample_02_0555 Other HAP1_WT 614 1 255 19 0 3 167 MRPL20,AURKAIP1,MXRA8,VWA1,ANKRD65,ATAD3C,LOC148413,CCNL2,LOC102724312,TMEM88B
SE_00_003100412 chr1:1407221-1435984 Sample_00_0031 Placenta placenta 412 5 1038 103 1 76 1459 MRPL20,LOC441869,TMEM88B,VWA1,AURKAIP1,ATAD3B,MXRA8,ATAD3C,LOC148413,CCNL2
SE_02_068000141 chr1:1409169-1432487 Sample_02_0680 Embryo H1 hESC-derived neural progenitor cells_Smad_48hr 141 7 847 91 1 45 1226 LOC102724312,TMEM88B,ANKRD65,AURKAIP1,MXRA8,VWA1,MRPL20,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_067900110 chr1:1409368-1431875 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 110 8 811 89 1 45 1226 LOC102724312,TMEM88B,ANKRD65,AURKAIP1,MXRA8,VWA1,MRPL20,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_081800805 chr1:1415438-1423921 Sample_02_0818 Ovary High-grade serous ovarian cancer 805 1 281 34 0 19 826 ANKRD65,AURKAIP1,MRPL20,VWA1,ATAD3B,ATAD3C,LOC148413,CCNL2,LOC102724312,TMEM88B
SE_02_092901043 chr1:1417512-1433237 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1043 4 561 64 1 54 1226 LOC102724312,TMEM88B,ANKRD65,AURKAIP1,MRPL20,VWA1,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_064701032 chr1:1417949-1432610 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1032 4 525 62 1 45 1226 LOC102724312,TMEM88B,ANKRD65,AURKAIP1,MRPL20,VWA1,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_064601333 chr1:1418008-1431127 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1333 3 472 54 1 45 1226 LOC102724312,TMEM88B,ANKRD65,AURKAIP1,MRPL20,VWA1,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_065201386 chr1:1418079-1432535 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1386 7 518 61 1 45 1226 LOC102724312,TMEM88B,ANKRD65,AURKAIP1,MRPL20,VWA1,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_039601741 chr1:1418625-1423538 Sample_02_0396 Skin NHEK-D 1741 1 171 19 0 19 759 LOC441869,AURKAIP1,TMEM88B,MRPL20,VWA1,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_064401099 chr1:1418822-1431324 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 1099 2 438 50 1 45 1136 LOC102724312,TMEM88B,ANKRD65,AURKAIP1,MRPL20,VWA1,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_064501737 chr1:1418835-1432631 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1737 4 486 57 1 45 1136 LOC102724312,TMEM88B,ANKRD65,AURKAIP1,MRPL20,VWA1,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_100700135 chr1:1418837-1432526 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 135 5 485 57 1 45 1136 LOC102724312,TMEM88B,ANKRD65,AURKAIP1,MRPL20,VWA1,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_103501772 chr1:1418857-1420969 Sample_02_1035 Mammary gland HCC70_Vehicle 1772 1 88 5 0 14 559 ANKRD65,AURKAIP1,MRPL20,VWA1,ATAD3C,LOC148413,CCNL2,LOC102724312,TMEM88B
SE_02_103601486 chr1:1418889-1420865 Sample_02_1036 Mammary gland HCC70_XY018 1486 1 82 5 0 14 523 ANKRD65,AURKAIP1,MRPL20,VWA1,ATAD3C,LOC148413,CCNL2,LOC102724312,TMEM88B
SE_02_035000150 chr1:1419294-1435692 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 150 8 570 59 1 72 1115 LOC441869,TMEM88B,VWA1,AURKAIP1,MRPL20,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_01_008800685 chr1:1419309-1438009 Sample_01_0088 Tibial nerve tibial-nerve 685 1 630 63 1 109 1413 LOC441869,TMEM88B,VWA1,AURKAIP1,MRPL20,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_077502218 chr1:1419339-1422954 Sample_02_0775 Pancreas EndoC-BH1_SE 2218 1 113 11 0 17 604 ANKRD65,AURKAIP1,MRPL20,VWA1,ATAD3B,ATAD3C,LOC148413,CCNL2,LOC102724312,TMEM88B
SE_00_002900530 chr1:1419796-1435657 Sample_00_0029 Ovary ovary 530 3 547 57 1 70 1000 LOC441869,TMEM88B,VWA1,AURKAIP1,MRPL20,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_00_002600294 chr1:1420663-1435680 Sample_00_0026 Muscle of trunk muscle-of-trunk 294 2 522 56 1 64 755 LOC441869,TMEM88B,VWA1,AURKAIP1,MRPL20,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_004400642 chr1:1420790-1438390 Sample_02_0044 Embryo endodermal CyT49_ES_D5 642 4 591 62 1 102 1014 LOC441869,TMEM88B,VWA1,AURKAIP1,MRPL20,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_004500651 chr1:1420968-1439007 Sample_02_0045 Embryo endodermal CyT49_ES_D7 651 4 601 64 1 99 998 LOC441869,TMEM88B,VWA1,AURKAIP1,MRPL20,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_00_005300275 chr1:1423050-1435357 Sample_00_0053 Embryo trophoblast cell originated from H1 275 3 444 48 1 54 408 LOC102724312,TMEM88B,AURKAIP1,MRPL20,VWA1,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_117300542 chr1:1423880-1429301 Sample_02_1173 Brain GBM01 542 1 206 23 0 12 400 TMEM88B,AURKAIP1,MRPL20,VWA1,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,LOC102724312
SE_02_120301230 chr1:1423889-1429352 Sample_02_1203 Brain NB1 1230 1 208 23 0 12 400 TMEM88B,AURKAIP1,MRPL20,VWA1,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,LOC102724312
SE_02_119601328 chr1:1424198-1428723 Sample_02_1196 Brain GBM32 1328 1 169 21 0 12 400 TMEM88B,AURKAIP1,MRPL20,VWA1,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,LOC102724312
SE_02_077501664 chr1:1425734-1428569 Sample_02_0775 Pancreas EndoC-BH1_SE 1664 1 87 11 0 12 400 TMEM88B,MRPL20,VWA1,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,LOC102724312
SE_02_121000533 chr1:1426726-1436065 Sample_02_1210 Brain GBM17 533 4 300 26 1 46 404 LOC102724312,TMEM88B,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_118100771 chr1:1426821-1442146 Sample_02_1181 Brain GBM10 771 4 515 41 1 101 1467 LOC102724312,TMEM88B,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_01_007400617 chr1:1427200-1437581 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 617 1 327 25 1 80 600 TMEM88B,VWA1,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_01_007800709 chr1:1427219-1437288 Sample_01_0078 Heart left ventricle heart-left-ventricle 709 1 313 25 1 71 539 TMEM88B,VWA1,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_01_007700523 chr1:1427300-1437784 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 523 1 329 25 1 80 622 TMEM88B,VWA1,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_01_008900654 chr1:1427403-1437336 Sample_01_0089 Transverse colon transverse-colon 654 1 309 25 1 75 533 TMEM88B,VWA1,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_01_008300634 chr1:1427468-1442758 Sample_01_0083 Sigmoid colon sigmoid-colon 634 2 522 42 1 101 1546 TMEM88B,VWA1,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_01_008500982 chr1:1427795-1438783 Sample_01_0085 Stomach stomach 982 1 351 30 1 81 464 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_037300497 chr1:1428120-1435833 Sample_02_0373 Skeletal muscle RMS206 497 1 265 23 1 45 127 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_036900335 chr1:1428136-1435658 Sample_02_0369 Skeletal muscle RD 335 1 262 23 1 42 89 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_037900335 chr1:1428136-1435658 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 335 1 262 23 1 42 89 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_110700146 chr1:1428140-1442074 Sample_02_1107 Brain SK-N-AS 146 5 484 40 1 100 1235 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_063300410 chr1:1428176-1441595 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 410 6 457 39 1 100 1128 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_045300362 chr1:1428201-1442578 Sample_02_0453 Neuroblastoma SJNB3 362 2 502 41 1 100 1337 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_063200508 chr1:1428207-1441565 Sample_02_0632 Gastrointestinal Stromal GIST-48B_DMSO 508 5 454 39 1 100 1121 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_089601239 chr1:1428211-1435645 Sample_02_0896 Heart left ventricle_LV1294 1239 2 260 23 1 42 81 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_100000345 chr1:1428224-1438135 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 345 6 321 28 1 79 400 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_133400117 chr1:1428229-1441734 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 117 4 463 39 1 100 1163 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_107800414 chr1:1428230-1435796 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 414 4 260 23 1 43 119 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_074300443 chr1:1428231-1435493 Sample_02_0743 Embryo ES derived mesoderm_day2 443 3 255 23 1 42 43 LOC102724312,MRPL20,VWA1,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_139200661 chr1:1428689-1439182 Sample_02_1392 Peripheral blood Mac-2A_ALK- 661 1 347 30 1 82 475 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_058400437 chr1:1429012-1436639 Sample_02_0584 Lung H1299 WT 437 1 237 22 1 47 182 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B,CPTP,TMEM240,AURKAIP1,ATAD3A,MIB2,MXRA8,DVL1,TAS1R3
SE_02_066900838 chr1:1429073-1435539 Sample_02_0669 Prostate prostate cancer_DSG 838 2 218 20 1 42 50 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_120501152 chr1:1429101-1437323 Sample_02_1205 Brain NB3 1152 1 255 22 1 74 324 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_01_008000459 chr1:1429178-1436859 Sample_01_0080 Prostate prostate 459 1 236 22 1 47 211 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_028500102 chr1:1429184-1439583 Sample_02_0285 Liver HuH7_untreat 102 1 333 30 1 95 588 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_00_002001096 chr1:1429191-1438962 Sample_00_0020 Large intestine large-intestine_108d 1096 2 309 28 1 82 418 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_01_007200462 chr1:1429204-1436675 Sample_01_0072 Breast epithelium breast-epithelium 462 1 233 22 1 47 182 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_028600614 chr1:1429204-1439202 Sample_02_0286 Liver HuH7_IL-1alpha_1h 614 1 323 28 1 82 477 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_080900317 chr1:1429230-1437073 Sample_02_0809 Mammary gland T47D Serum 317 1 243 22 1 55 269 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_020700486 chr1:1429298-1438897 Sample_02_0207 Stomach FU97 486 2 304 27 1 82 400 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_00_003600785 chr1:1429300-1438869 Sample_00_0036 Small intestine small-intestine_108days 785 2 302 27 1 82 400 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_081800249 chr1:1429381-1437092 Sample_02_0818 Ovary High-grade serous ovarian cancer 249 1 240 22 1 61 275 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_037500254 chr1:1429405-1435625 Sample_02_0375 Skeletal muscle RMS216 254 1 210 20 1 42 73 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_067200269 chr1:1429442-1438888 Sample_02_0672 Endometrium endometrium cancer_DSG 269 1 297 27 1 82 400 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_01_007500815 chr1:1429451-1437808 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 815 1 266 22 1 79 400 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_121300526 chr1:1429507-1438630 Sample_02_1213 Brain GBM31 526 1 289 27 1 81 400 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_093001472 chr1:1429516-1433272 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1472 1 121 17 1 27 0 LOC102724312,MRPL20,VWA1,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_037200637 chr1:1429523-1435648 Sample_02_0372 Skeletal muscle RMS008 637 1 207 20 1 42 81 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_118900458 chr1:1429540-1435668 Sample_02_1189 Brain GBM22 458 1 207 20 1 42 93 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_121100517 chr1:1429544-1436673 Sample_02_1211 Brain GBM21 517 1 223 22 1 47 182 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_085701306 chr1:1429546-1436232 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1306 1 214 21 1 47 182 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_117300241 chr1:1429548-1438852 Sample_02_1173 Brain GBM01 241 1 294 27 1 82 400 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_01_010101332 chr1:1429549-1436385 Sample_01_0101 Pancreas pancreas_54y 1332 1 215 21 1 47 182 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_120300866 chr1:1429552-1435649 Sample_02_1203 Brain NB1 866 1 207 20 1 42 81 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_119300727 chr1:1429561-1437264 Sample_02_1193 Brain GBM27 727 1 243 22 1 67 308 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_119600497 chr1:1429563-1437722 Sample_02_1196 Brain GBM32 497 1 263 22 1 79 400 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_077502152 chr1:1429568-1435232 Sample_02_0775 Pancreas EndoC-BH1_SE 2152 1 198 20 1 42 0 LOC102724312,MRPL20,VWA1,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_091501001 chr1:1429573-1435595 Sample_02_0915 Heart left ventricle_DCM_LV1371 1001 1 206 20 1 42 61 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_109200599 chr1:1429575-1437333 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 599 1 244 22 1 74 328 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_120400761 chr1:1429579-1435603 Sample_02_1204 Brain NB2 761 1 207 20 1 42 65 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_119800654 chr1:1429582-1435555 Sample_02_1198 Brain GBM34 654 1 205 20 1 42 53 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_108000774 chr1:1429586-1434379 Sample_02_1080 Muscle JR1 shCtrl 774 1 162 19 1 36 0 LOC102724312,MRPL20,VWA1,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_119400549 chr1:1429598-1436643 Sample_02_1194 Brain GBM28 549 1 222 22 1 47 182 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_155301062 chr1:1429598-1441644 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 1062 2 408 36 1 100 1146 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_107900267 chr1:1429601-1435630 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 267 1 207 20 1 42 74 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_108700350 chr1:1429605-1438211 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 350 2 274 25 1 80 400 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_046200133 chr1:1429609-1435036 Sample_02_0462 Lung NCI-H2171 cells 133 1 194 20 1 42 0 LOC102724312,MRPL20,VWA1,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_081900342 chr1:1429638-1438695 Sample_02_0819 Ovary Mucinous ovarian cancer 342 1 288 27 1 81 400 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_067400161 chr1:1429647-1438848 Sample_02_0674 Endometrium E1_FA 161 1 292 27 1 82 400 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_035300460 chr1:1429648-1438828 Sample_02_0353 Colon HT29 460 2 292 27 1 82 400 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_108600345 chr1:1429681-1437281 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 345 1 240 22 1 68 315 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_147000206 chr1:1429688-1436472 Sample_02_1470 Umbilical Vein H441 206 1 216 22 1 47 182 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_133500141 chr1:1429691-1441744 Sample_02_1335 Lung NCI-H1299_wtSMARCA4_Dox 141 4 409 36 1 100 1165 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_081700613 chr1:1429719-1437206 Sample_02_0817 Ovary Epithelial ovarian cancer 613 1 239 22 1 62 298 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_081000148 chr1:1429800-1437311 Sample_02_0810 Mammary gland T47D noSerum 148 1 240 22 1 72 320 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_066800337 chr1:1429805-1434545 Sample_02_0668 Prostate prostate cancer FA 337 3 166 19 1 39 0 LOC102724312,MRPL20,VWA1,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_052200204 chr1:1429976-1441488 Sample_02_0522 Colon SW620 204 2 388 35 1 100 1101 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_151300561 chr1:1430017-1438170 Sample_02_1513 Lung Transitional AT2->1 cells 561 2 262 24 1 79 400 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_033001081 chr1:1430043-1435301 Sample_02_0330 Endoderm MHG 1081 1 187 18 1 42 0 TMEM88B,MRPL20,VWA1,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_133700091 chr1:1430059-1441847 Sample_02_1337 Lung NCI-H1299-wtSMARCA4_Dox_SAHA 91 3 407 35 1 100 1190 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_001400088 chr1:1430073-1435887 Sample_02_0014 Liver HepG2_shBRG1 88 1 198 18 1 45 141 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_001500145 chr1:1430089-1439228 Sample_02_0015 Liver HepG2_shNS 145 1 300 26 1 82 486 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_097100784 chr1:1430093-1437047 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 784 1 219 20 1 52 260 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_133300092 chr1:1430108-1441806 Sample_02_1333 Lung NCI-H1299_wtSMARCA4 92 2 403 35 1 100 1184 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_004000457 chr1:1430122-1435810 Sample_02_0040 Embryo PFG 457 1 196 18 1 43 124 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_055800226 chr1:1430183-1435610 Sample_02_0558 iPSCs FX52 iPSCs mock 226 1 193 18 1 40 69 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_074200399 chr1:1430229-1444934 Sample_02_0742 Embryo ESCs_day0 399 2 523 40 0 98 1414 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_093200550 chr1:1430238-1435611 Sample_02_0932 Embryo H9 WT_1 550 1 190 16 0 40 69 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_109100417 chr1:1430250-1435579 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 417 1 188 16 0 40 59 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_093400371 chr1:1430280-1436115 Sample_02_0934 Embryo H7-WT 371 1 196 17 0 43 182 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_01_011400235 chr1:1430332-1442570 Sample_01_0114 Colon HCT116_encode 235 6 432 34 0 98 1337 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_00_003000407 chr1:1430403-1434535 Sample_00_0030 Pancreas pancreas 407 5 150 14 0 37 0 TMEM88B,MRPL20,VWA1,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_103600849 chr1:1430404-1435032 Sample_02_1036 Mammary gland HCC70_XY018 849 1 174 15 0 40 0 LOC102724312,MRPL20,VWA1,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_103500442 chr1:1430441-1436451 Sample_02_1035 Mammary gland HCC70_Vehicle 442 1 196 17 0 41 182 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_133600104 chr1:1430475-1441354 Sample_02_1336 Lung NCI-H1299_mutSMARCA4_Dox 104 3 365 31 0 94 1071 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_138400769 chr1:1430551-1434640 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 769 1 150 14 0 34 0 LOC102724312,MRPL20,VWA1,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_098800912 chr1:1430584-1441387 Sample_02_0988 Blood K562_EPZ 912 2 363 31 0 94 1075 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_158500502 chr1:1430644-1435523 Sample_02_1585 Blood SupB15 DMSO 502 2 174 15 0 35 48 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_102900902 chr1:1431108-1435643 Sample_02_1029 Colon HCT116 902 1 161 11 0 28 81 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_006800439 chr1:1431418-1442023 Sample_02_0068 Skin A375_DMSO 439 3 376 28 0 86 1226 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_139400366 chr1:1431525-1438373 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 366 3 226 16 0 66 400 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_01_002200213 chr1:1431975-1437068 Sample_01_0022 Prostate C4-2B 213 1 163 7 0 38 267 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_114400133 chr1:1432282-1442761 Sample_02_1144 Peripheral nerve S462_PRC2 mutant 133 5 373 24 0 86 1369 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_101000086 chr1:1432467-1441049 Sample_02_1010 Brain Lateral temporal lobe_3T_AD 86 2 291 19 0 86 982 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_051100730 chr1:1432539-1435462 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 730 1 108 4 0 28 42 LOC102724312,MRPL20,VWA1,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_050900492 chr1:1432548-1435522 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 492 1 108 4 0 28 48 LOC102724312,VWA1,MRPL20,ANKRD65,ATAD3B,ATAD3C,LOC148413,CCNL2,TMEM88B
SE_02_021601088 chr1:1433420-1445887 Sample_02_0216 Skin NHEK_scramble 1088 4 447 29 0 68 1414 VWA1,TMEM88B,MRPL20,LOC441869,ATAD3B,ATAD3C,LOC148413,CCNL2
SE_02_138300120 chr1:1473535-1572858 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 120 57 4479 396 5 248 5958 ATAD3A,ATAD3B,SSU72,TMEM240,C1ORF233,ATAD3C,VWA1,MIB2,LOC102724312,TMEM88B
SE_02_138100122 chr1:1473650-1571216 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 122 50 4438 392 5 248 5958 ATAD3A,ATAD3B,SSU72,TMEM240,C1ORF233,ATAD3C,VWA1,MIB2,LOC102724312,TMEM88B
SE_02_103500203 chr1:1474288-1558179 Sample_02_1035 Mammary gland HCC70_Vehicle 203 33 3942 346 3 234 5498 ATAD3A,ATAD3B,SSU72,TMEM240,C1ORF233,ATAD3C,VWA1,LOC102724312,TMEM88B
SE_02_021600489 chr1:1496456-1520634 Sample_02_0216 Skin NHEK_scramble 489 6 1065 93 0 31 918 ATAD3A,ATAD3C,C1ORF70,ATAD3B
Genomic distribution of SEs associated with ATAD3C
Genome Browser

The strength of the tissue affected by the gene

Expression of ATAD3C

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)