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Super-enhancer overview

SE ID: SE_02_109100417
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: T47D_shCtrl_shRING1B_8hr
Genomic region: chr1:1430250-1435579
Size: 5329
Super-enhancer rank 417
Number of SE elements: 1
ChIP density(Case|Control): 13135.985|403.9382
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LOC102724312 ;
ROSE Overlap LOC102724312 ; VWA1 ;
ROSE Proximal MRPL20 ; VWA1 ; ANKRD65 ; ATAD3B ; ATAD3C ; LOC148413 ; CCNL2 ; LOC102724312 ; TMEM88B ;
ROSE Closest LOC102724312 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ATAD3A ; MXRA8 ; MRPL20 ; LOC102724312 ; TMEM88B ; LOC148413 ; CCNL2 ; ANKRD65 ; VWA1 ; AURKAIP1 ; DVL1 ; MIR6808 ; ATAD3B ; ATAD3C ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_109100417 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers