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Super-enhancer overview

SE ID: SE_02_004400642
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Embryo endodermal
Biosample name: CyT49_ES_D5
Genomic region: chr1:1420790-1438390
Size: 17600
Super-enhancer rank 642
Number of SE elements: 4
ChIP density(Case|Control): 15250.4|1955.36
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TMEM88B;
ROSE Overlap LOC441869; TMEM88B; VWA1;
ROSE Proximal AURKAIP1; MRPL20; ATAD3B; ATAD3C; LOC148413; CCNL2;
ROSE Closest TMEM88B;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_004400642 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers