Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000108465
Gene: CDK5RAP3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:47967810-47981781 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_022400182 chr17:47943910-47992504 Sample_02_0224 Haematopoietic and lymphoid tissue P12-ICHIKAWA 182 6 1242 195 8 0 2362 PNPO,PRR15L,CDK5RAP3,COPZ2,MIR152,SP2
SE_02_022500202 chr17:47944129-48018655 Sample_02_0225 Haematopoietic and lymphoid tissue PF-382 202 9 1898 284 9 0 2362 PNPO,PRR15L,CDK5RAP3,COPZ2,NFE2L1,SP2,MIR152
SE_02_053900026 chr17:47944376-48027070 Sample_02_0539 Brain SK-N-BE_2_-C_GFP_control 26 34 2089 315 9 11 2502 CDK5RAP3,PRR15L,COPZ2,PNPO,NFE2L1,SP2,SP2-AS1,MIR152
SE_00_005600311 chr17:47944460-47983619 Sample_00_0056 Sigmoid colon sigmoid colon 3y 311 15 1007 160 8 0 2352 CDK5RAP3,PRR15L,PNPO,SP2-AS1,SP2
SE_03_000800252 chr17:47945387-47972818 Sample_03_0008 Lung A549_dexamethasone_7h 252 1 658 116 8 0 1350 PNPO,PRR15L,CDK5RAP3,SP2
SE_02_144200007 chr17:47945622-48027017 Sample_02_1442 Lung H69 7 29 2060 309 9 11 2381 CDK5RAP3,PRR15L,COPZ2,PNPO,NFE2L1,SP2,SP2-AS1,MIR152
SE_03_000700229 chr17:47945717-47972251 Sample_03_0007 Lung A549_dexamethasone_12h 229 2 641 114 8 0 1290 PNPO,PRR15L,CDK5RAP3,SP2
SE_02_008600101 chr17:47945932-47973085 Sample_02_0086 Pancreas CAPAN1 101 1 646 113 8 0 1243 PNPO,PRR15L,CDK5RAP3,SP2
SE_03_000900444 chr17:47946045-47972512 Sample_03_0009 Lung A549_dexamethasone_3h 444 2 633 112 8 0 1222 PNPO,PRR15L,CDK5RAP3,SP2
SE_03_001000496 chr17:47946171-47972611 Sample_03_0010 Lung A549_dexamethasone_1h 496 2 630 112 8 0 1193 PNPO,PRR15L,CDK5RAP3
SE_03_000400435 chr17:47946266-47972384 Sample_03_0004 Lung A549_dexamethasone_4h 435 3 624 112 8 0 1173 PNPO,PRR15L,CDK5RAP3
SE_02_025400009 chr17:47948383-48027310 Sample_02_0254 Neuroblastoma IMR5-75 9 13 2000 303 9 11 1909 PNPO,PRR15L,COPZ2,CDK5RAP3,NFE2L1,MIR152
SE_02_032200308 chr17:47948414-47972645 Sample_02_0322 Colon Caco-2 308 3 583 105 8 0 832 PNPO,PRR15L,CDK5RAP3
SE_02_030200002 chr17:47948492-48025180 Sample_02_0302 Neuroblastoma IMR32 2 4 1951 296 9 4 1750 PNPO,PRR15L,CDK5RAP3,COPZ2,NFE2L1,MIR152
SE_02_155300316 chr17:47948670-48031002 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 316 26 2077 307 9 11 2033 CDK5RAP3,PRR15L,COPZ2,PNPO,NFE2L1,SP2-AS1,MIR152
SE_02_030100231 chr17:47965764-48027308 Sample_02_0301 Neuroblastoma GIMEN 231 11 1581 236 4 11 1320 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_149200597 chr17:47967508-48027329 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 597 19 1534 226 4 11 1320 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_080800260 chr17:47967556-48025802 Sample_02_0808 Ovary RMG1_ARID1A KO 260 28 1502 219 4 9 1180 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_087500492 chr17:47967620-48027152 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 492 26 1528 222 4 11 1320 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_059400190 chr17:47967631-48025737 Sample_02_0594 iPSC-derived neural progenitors 190 17 1500 219 4 8 1180 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152,SP2,CBX1
SE_02_054000020 chr17:47967703-48027268 Sample_02_0540 Brain SK-N-BE_2_-C_PI3K_engineered 20 24 1530 223 4 11 1320 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_110300006 chr17:47967752-48026952 Sample_02_1103 Brain NB-1643 6 11 1522 221 4 11 1320 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_110200019 chr17:47968385-48027044 Sample_02_1102 Brain LA-N-5 19 14 1514 220 3 11 1320 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_030300003 chr17:47968866-48027334 Sample_02_0303 Neuroblastoma LAN1 3 6 1509 221 3 11 1320 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_025200004 chr17:47969246-48027603 Sample_02_0252 Neuroblastoma IMR5-75-shMYCN-MYCN_high 4 2 1509 221 3 11 1320 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_031200050 chr17:47969697-48027691 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 50 4 1501 218 3 11 1320 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_003100461 chr17:47969740-48018061 Sample_02_0031 Haematopoietic and lymphoid tissue blood Jurkat 461 8 1272 183 3 0 1180 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_030600007 chr17:47969749-48025084 Sample_02_0306 Autonomic ganglia SH-SY5Y 7 3 1439 210 3 2 1180 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_030400006 chr17:47969776-48024838 Sample_02_0304 Neuroblastoma N206 6 4 1435 210 3 2 1180 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_031100018 chr17:47969916-48027489 Sample_02_0311 Neuroblastoma SK-N-AS 18 4 1490 216 3 11 1320 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_037000598 chr17:47970188-48004956 Sample_02_0370 Skeletal muscle RH4 598 5 949 148 3 0 1180 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_031000012 chr17:47970683-48024980 Sample_02_0310 Neuroblastoma SJNB8 12 3 1421 205 2 2 1136 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_110600022 chr17:47970890-48027099 Sample_02_1106 Brain NGP 22 12 1456 207 2 11 1233 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_121600311 chr17:47970964-48024288 Sample_02_1216 Blood Jurkat ZBTB1 KO 311 11 1391 197 2 2 1066 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_110700038 chr17:47970991-48024759 Sample_02_1107 Brain SK-N-AS 38 10 1401 199 2 2 1063 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_110100042 chr17:47971008-48027972 Sample_02_1101 Brain KELLY 42 14 1473 210 2 11 1198 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_150000004 chr17:47971111-48024499 Sample_02_1500 Brain KELLY_untreat 4 9 1390 196 1 2 1036 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_074000448 chr17:47971221-48012217 Sample_02_0740 Muscle RH3 448 9 1093 160 1 0 1008 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_110000023 chr17:47972630-48027055 Sample_02_1100 Brain COG-N-415 23 14 1412 196 1 11 1069 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_047100020 chr17:47972881-48027020 Sample_02_0471 Brain Kelly DMSO 20 10 1406 194 1 11 1069 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_041100086 chr17:47973128-48027516 Sample_02_0411 Liver TTC549_untreated 86 10 1416 198 1 11 1069 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_144500460 chr17:47973471-48027204 Sample_02_1445 Adipose SW872_TAZ4SA 460 22 1394 191 1 11 1048 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_110800027 chr17:47973472-48027205 Sample_02_1108 Brain SK-N-BE_2_-C 27 13 1394 191 1 11 1048 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_041200077 chr17:47973719-48027400 Sample_02_0412 Liver TTC549_Doxycycline 77 13 1393 192 1 11 1019 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_031900003 chr17:47974867-48024778 Sample_02_0319 Neuroblastoma NB-EBc1 3 3 1287 178 1 2 706 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_054400043 chr17:47975017-48027186 Sample_02_0544 Brain Kelly_ResVeh 43 14 1338 186 1 11 832 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_031300004 chr17:47975072-48026064 Sample_02_0313 Neuroblastoma SK-N-DZ 4 5 1314 184 1 9 701 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_054200057 chr17:47975156-48027186 Sample_02_0542 Brain Kelly_ResJQ1 57 10 1334 186 1 11 806 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_110500082 chr17:47975179-48024777 Sample_02_1105 Brain NBL-S 82 10 1276 178 1 2 662 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_050600113 chr17:47975442-48028305 Sample_02_0506 Esophagus TE5_1 113 30 1353 188 1 11 758 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_054100030 chr17:47975623-48025081 Sample_02_0541 Brain Kelly_NaiveJQ1 30 18 1272 179 1 2 579 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_062800044 chr17:47975766-48024431 Sample_02_0628 Brain CHP-134 44 24 1251 174 1 2 555 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152,CBX1,SP2
SE_02_051700113 chr17:47976145-48028304 Sample_02_0517 Esophagus TE5 113 25 1326 186 1 11 625 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_047200018 chr17:47976606-48024404 Sample_02_0472 Brain Kelly TAE resistant 18 10 1226 171 1 2 457 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_001900009 chr17:47977533-48027208 Sample_02_0019 Embryo Neural crest cells 9 17 1252 178 1 11 545 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_031400037 chr17:47978028-48027616 Sample_02_0314 Neuroblastoma SK-N-FI 37 2 1244 176 1 11 483 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_031800003 chr17:47978036-48025088 Sample_02_0318 Neuroblastoma NB69 3 2 1186 168 1 2 338 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_029600037 chr17:47978125-48026384 Sample_02_0296 Neuroblastoma CLB-BER-Lud 37 6 1210 170 1 9 418 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_036400159 chr17:47978173-48018846 Sample_02_0364 Skeletal muscle CTR 159 4 1035 142 1 0 334 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_025300012 chr17:47978177-48027993 Sample_02_0253 Brain BE2C_DMSO 12 3 1246 175 1 11 474 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_030800005 chr17:47978193-48024651 Sample_02_0308 Neuroblastoma SJNB1 5 3 1173 164 1 2 334 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_031500002 chr17:47978206-48024894 Sample_02_0315 Neuroblastoma TR14 2 4 1180 167 1 2 334 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_029900012 chr17:47978230-48024898 Sample_02_0299 Neuroblastoma CLB-MA 12 5 1179 167 1 2 334 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_030000043 chr17:47978240-48024726 Sample_02_0300 Neuroblastoma CLB-PE 43 3 1171 164 1 2 334 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_030900008 chr17:47978255-48019173 Sample_02_0309 Neuroblastoma SJNB6 8 3 1037 143 1 0 334 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_027700084 chr17:47978273-48027536 Sample_02_0277 Retina FW18 84 8 1235 174 1 11 474 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_034100052 chr17:47978293-48025039 Sample_02_0341 Autonomic ganglia SH-SY5Y_untreat 52 9 1178 166 1 2 334 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_025100008 chr17:47978300-48025021 Sample_02_0251 Autonomic ganglia SH-SY5Y-MYCN-OFF 8 6 1178 166 1 2 334 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_007500002 chr17:47978306-48024969 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 2 10 1177 166 1 2 334 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_128600016 chr17:47978318-48024344 Sample_02_1286 Lung NCI-H378_p8-15 16 21 1159 161 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_042100008 chr17:47978319-48026054 Sample_02_0421 Brain BE2C_3 8 7 1201 169 1 9 349 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_096300077 chr17:47978335-48027143 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 77 10 1223 171 1 11 474 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_029700091 chr17:47978348-48027197 Sample_02_0297 Neuroblastoma CLB-CAR 91 4 1224 171 1 11 474 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_030700038 chr17:47978363-48026424 Sample_02_0307 Neuroblastoma SJNB12 38 10 1206 170 1 9 429 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_034000013 chr17:47978384-48024762 Sample_02_0340 Brain BE2C_2 13 5 1168 163 1 2 334 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_054300023 chr17:47978451-48027128 Sample_02_0543 Brain Kelly_vehicle 23 13 1221 171 1 11 474 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_120000110 chr17:47978455-48027108 Sample_02_1200 Brain GBM36 110 19 1221 171 1 11 474 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_096800168 chr17:47978456-48024562 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 168 10 1162 162 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_029800025 chr17:47978463-48024578 Sample_02_0298 Neuroblastoma CLB-GA 25 3 1162 162 1 2 334 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_118700135 chr17:47978487-48030914 Sample_02_1187 Brain GBM16 135 17 1303 178 1 11 643 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_096200117 chr17:47978493-48024630 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 117 16 1162 163 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_106100112 chr17:47978504-48027175 Sample_02_1061 Bone TC71_WT 112 13 1218 171 1 11 474 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_148800112 chr17:47978504-48027175 Sample_02_1488 Bone TC-71 112 14 1218 171 1 11 474 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_096700119 chr17:47978505-48024485 Sample_02_0967 Brain H3.3K27M_JN57 119 19 1156 162 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_110900022 chr17:47978531-48025671 Sample_02_1109 Brain SK-N-FI 22 3 1187 168 1 8 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_124600012 chr17:47978544-48024611 Sample_02_1246 Brain LAN5_ATRA 12 9 1158 163 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_119100339 chr17:47978550-48027005 Sample_02_1191 Brain GBM25 339 16 1212 170 1 11 474 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_110400008 chr17:47978558-48024786 Sample_02_1104 Brain NB-69 8 3 1163 163 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_117600581 chr17:47978559-48024668 Sample_02_1176 Brain GBM04 581 11 1161 163 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_119300283 chr17:47978560-48027165 Sample_02_1193 Brain GBM27 283 18 1217 171 1 11 474 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_097000277 chr17:47978570-48024563 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 277 15 1157 162 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_095300284 chr17:47978570-48027054 Sample_02_0953 Brain H3.3K27M_1840 284 17 1215 171 1 11 474 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_119500267 chr17:47978570-48032338 Sample_02_1195 Brain GBM29 267 33 1336 183 1 11 714 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_080000047 chr17:47978572-48025753 Sample_02_0800 Brain 3679 47 15 1189 168 1 9 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_118500464 chr17:47978574-48024658 Sample_02_1185 Brain GBM14 464 13 1161 163 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_117800187 chr17:47978579-48024882 Sample_02_1178 Brain GBM07 187 11 1168 166 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_141000150 chr17:47978580-48027213 Sample_02_1410 Brain GSC6 150 16 1217 171 1 11 474 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_047300017 chr17:47978582-48008399 Sample_02_0473 Brain Kelly JQ1 treated TAE resistant 17 1 773 116 1 0 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_149900038 chr17:47978587-48024637 Sample_02_1499 Brain BE_2_-C 38 18 1160 163 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_148900006 chr17:47978588-48018419 Sample_02_1489 Bone TC-106 6 15 1014 140 1 0 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_124500014 chr17:47978588-48024593 Sample_02_1245 Brain LAN5_Ethanol 14 16 1158 163 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_108000145 chr17:47978588-48025796 Sample_02_1080 Muscle JR1 shCtrl 145 13 1189 168 1 9 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_118000215 chr17:47978590-48024655 Sample_02_1180 Brain GBM09 215 15 1161 163 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_106800012 chr17:47978597-48024400 Sample_02_1068 Brain NGP_ctrl 12 18 1152 161 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_108100187 chr17:47978599-48018422 Sample_02_1081 Muscle CTR shCtrl 187 17 1014 140 1 0 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_01_011100024 chr17:47978603-48025802 Sample_01_0111 Brain SK-N-SH 24 16 1188 168 1 9 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_117900432 chr17:47978604-48024849 Sample_02_1179 Brain GBM08 432 7 1166 166 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_118300172 chr17:47978606-48027072 Sample_02_1183 Brain GBM12 172 25 1214 171 1 11 474 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_097200200 chr17:47978610-48025056 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 200 13 1170 166 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_087700367 chr17:47978612-48015143 Sample_02_0877 Muscle SMS-CTR_CASZ1b_Dox 367 16 926 131 1 0 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_098400073 chr17:47978613-48025007 Sample_02_0984 Brain H3.3K27M-KO_DIPGXIII-C5P5 73 15 1170 166 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_096500094 chr17:47978621-48024375 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 94 23 1151 161 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_078800103 chr17:47978624-48024531 Sample_02_0788 Brain 3565 103 15 1154 162 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_096600398 chr17:47978628-48027205 Sample_02_0966 Brain H3.3K27M_JN29-BS3 398 11 1216 171 1 11 474 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_150800011 chr17:47978632-48024043 Sample_02_1508 Brain NGPz_untreat 11 16 1143 160 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_106300009 chr17:47978633-48018467 Sample_02_1063 Brain CLB-GA-control 9 6 1013 140 1 0 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_085700100 chr17:47978634-48024875 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 100 10 1166 166 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_096900249 chr17:47978638-48026884 Sample_02_0969 Brain H3.3K27M_PL637 249 15 1205 170 1 11 474 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_095600191 chr17:47978640-48030834 Sample_02_0956 Brain IDH1_2658 191 10 1295 178 1 11 643 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_097600069 chr17:47978644-48024921 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 69 13 1165 166 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_053600013 chr17:47978646-48024335 Sample_02_0536 Brain SK-N-BE_2_-C_resistant_vehicle 13 36 1149 161 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_085400065 chr17:47978647-48024792 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 65 10 1163 166 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_106400007 chr17:47978650-48024005 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 7 11 1142 160 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_121200315 chr17:47978655-48024510 Sample_02_1212 Brain GBM30 315 10 1152 162 1 2 331 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_119601149 chr17:47978670-48030661 Sample_02_1196 Brain GBM32 1149 15 1292 178 1 11 639 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_109900393 chr17:47978680-48027762 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 393 20 1229 174 1 11 468 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_123600239 chr17:47978682-48015315 Sample_02_1236 Skin MKL1_virus_positive 239 10 929 132 1 0 328 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152,SNX11
SE_02_101500274 chr17:47978694-48027049 Sample_02_1015 Embryo H9_ Undifferentiated 274 12 1212 171 1 11 462 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_069300050 chr17:47978696-48027015 Sample_02_0693 Lung NCI-H69_no infection 50 19 1210 170 1 11 462 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_098100238 chr17:47978698-48025725 Sample_02_0981 Brain H3.3K27M-KO_BT245-C4P6 238 11 1185 168 1 8 322 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_097500060 chr17:47978699-48025134 Sample_02_0975 Brain H3.3K27M-KO_DIPGXIII-c10p5-Rx_R2_cells 60 16 1168 166 1 4 322 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_118400139 chr17:47978700-48027067 Sample_02_1184 Brain GBM13 139 28 1212 171 1 11 462 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_093200008 chr17:47978702-48024293 Sample_02_0932 Embryo H9 WT_1 8 18 1148 161 1 2 322 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_049400007 chr17:47978704-48018385 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 7 7 1011 140 1 0 322 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_118900217 chr17:47978707-48024519 Sample_02_1189 Brain GBM22 217 11 1152 162 1 2 322 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_096000025 chr17:47978708-48025733 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 25 16 1185 168 1 8 322 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_097300228 chr17:47978753-48025123 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 228 8 1167 166 1 4 315 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_053800013 chr17:47978786-48027022 Sample_02_0538 Brain SK-N-BE_2_-C_resistant_JQ1 13 18 1206 170 1 11 453 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_098200315 chr17:47978806-48024484 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 315 6 1148 162 1 2 310 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_123500028 chr17:47978938-48027188 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 28 22 1206 171 1 11 425 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_074400161 chr17:47979186-48015809 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 161 17 932 131 1 0 263 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_068700233 chr17:47979301-48028087 Sample_02_0687 Lung NCI-H146_no infection 233 17 1216 172 1 11 403 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_033900034 chr17:47979412-48026433 Sample_02_0339 Neuroblastoma NGP 34 10 1177 168 1 9 359 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_093400003 chr17:47979554-48024197 Sample_02_0934 Embryo H7-WT 3 15 1123 159 1 2 263 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_141400007 chr17:47979601-48015358 Sample_02_1414 Brain IMR32 7 10 909 130 1 0 263 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_069900015 chr17:47979728-48018368 Sample_02_0699 Brain Kelly_shB4_Res 15 23 982 135 1 0 263 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_049300261 chr17:47979731-48027737 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 261 19 1199 169 1 11 403 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152
SE_02_027500167 chr17:47979800-48027535 Sample_02_0275 Retina FW14 167 8 1193 169 1 11 403 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_049500017 chr17:47979887-48015511 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 17 12 907 128 1 0 263 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_069100052 chr17:47979963-48025729 Sample_02_0691 Lung NCI-H524_no infection 52 24 1150 163 1 8 263 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_053700004 chr17:47980264-48015078 Sample_02_0537 Brain SK-N-BE_2_-C_naive_JQ1 4 15 882 126 1 0 263 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_084000484 chr17:47980287-48027078 Sample_02_0840 Embryo hNPCs_R1159Q/+ 484 12 1172 166 1 11 403 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152,SP2,CBX1
SE_02_007600040 chr17:47980309-48024546 Sample_02_0076 Autonomic ganglia SH-SY5Y_DMSO_3h 40 10 1109 156 1 2 263 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_033800013 chr17:47980400-48024762 Sample_02_0338 Neuroblastoma BE2 13 10 1114 157 1 2 263 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_027800088 chr17:47980419-48024954 Sample_02_0278 Retina FW24 88 9 1121 160 1 2 261 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_004600009 chr17:47980436-48024067 Sample_02_0046 Embryo endodermal CyT49_ES_D10 9 13 1097 154 1 2 260 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_119000196 chr17:47980439-48024521 Sample_02_1190 Brain GBM24 196 15 1107 156 1 2 258 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_128300548 chr17:47980946-48024586 Sample_02_1283 Lung NCI-H2107_p8-15 548 9 1095 157 1 2 172 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_022000043 chr17:47981052-48024861 Sample_02_0220 Brain BE2C_1 43 6 1101 160 1 2 149 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_031600046 chr17:47981102-48025270 Sample_02_0316 Neuroblastoma CHP212 46 5 1105 160 1 6 138 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_004500814 chr17:47981259-48012244 Sample_02_0045 Embryo endodermal CyT49_ES_D7 814 6 793 120 1 0 118 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_007800020 chr17:47981376-48027176 Sample_02_0078 Neuroblastoma low-MYCN-Neuroblastoma-patient-cells 20 12 1146 165 1 11 237 COPZ2,CDK5RAP3,NFE2L1,PRR15L,PNPO,MIR152
SE_02_070000010 chr17:47981494-48015631 Sample_02_0700 Brain Kelly_shLUC_Res 10 17 873 127 1 0 79 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_01_005000606 chr17:47981679-48016541 Sample_01_0050 Embryo neural-cell 606 6 891 129 1 0 46 CDK5RAP3,COPZ2,NFE2L1,PRR15L,PNPO,MIR152
SE_02_098800364 chr17:47981764-48027953 Sample_02_0988 Blood K562_EPZ 364 14 1153 166 1 11 179 CDK5RAP3,COPZ2,PNPO,NFE2L1,PRR15L,SP2-AS1,MIR152

Genomic distribution of SEs associated with CDK5RAP3

The strength of the tissue affected by the gene


Expression of CDK5RAP3