Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_149900047 chr1:162878272-162947072 68800 47 23 1816 82 13 197 0 C1ORF110
SE_02_149900080 chr1:163146436-163207194 60758 80 30 1651 110 8 135 360 LOC101928404,RGS5
SE_02_149900030 chr1:179741908-179817852 75944 30 32 2069 256 8 201 1109 FAM163A
SE_02_149900166 chr1:182594310-182636207 41897 166 22 1102 79 7 186 1069 RGS16,LOC284648,RGS8,RNASEL
SE_02_149900070 chr1:202547173-202600599 53426 70 20 1218 53 1 220 2728 SYT2,PPP1R12B
SE_02_149900114 chr1:213982452-214027448 44996 114 23 1046 30 4 610 604 PROX1-AS1,PROX1
SE_02_149900014 chr1:216497262-216628124 130862 14 46 3665 33 22 907 439 ESRRG,USH2A
SE_02_149900076 chr1:234498961-234574112 75151 76 21 2206 135 6 0 486 LINC01354,IRF2BP2,TARBP1
SE_02_149900110 chr1:234597707-234614797 17090 110 4 466 28 2 0 780 IRF2BP2,LOC101927787,LINC00184
SE_02_149900142 chr1:23528397-23602261 73864 142 27 2139 98 2 259 977 ID3,LOC101928163,E2F2,ASAP3,MDS2
SE_02_149900097 chr1:239859810-239898281 38471 97 19 1108 1 3 61 83 CHRM3,CHRM3-AS1
SE_02_149900153 chr1:95373466-95411396 37930 153 8 984 47 2 131 0 FLJ31662
SE_02_149900151 chr1:95603266-95657639 54373 151 11 1405 43 2 311 0 LOC100996635
SE_02_149900138 chr1:97119129-97176697 57568 138 14 1500 25 4 372 0 DPYD,DPYD-AS1
SE_02_149900094 chr10:102596286-102679453 83167 94 27 2012 218 25 757 3158 SUFU,TRIM8,ARL3,SFXN2
SE_02_149900137 chr10:21515841-21535760 19919 137 6 375 11 0 451 1100 MLLT10,SKIDA1,CASC10,MIR1915
SE_02_149900104 chr10:42934202-42993427 59225 104 23 1868 233 4 121 0 LINC01264,MIR5100
SE_02_149900154 chr10:43038721-43109546 70825 154 36 2081 260 14 176 808 RET,CSGALNACT2,MIR5100
SE_02_149900062 chr10:52597058-52659687 62629 62 24 1732 119 12 164 0 MBL2
SE_02_149900026 chr10:71191093-71282345 91252 26 32 2631 151 8 309 671 UNC5B-AS1,UNC5B,SLC29A3
SE_02_149900079 chr10:72297354-72340469 43115 79 17 1211 85 0 117 889 DNAJB12,DDIT4
SE_02_149900010 chr10:79066717-79287258 220541 10 101 6575 164 65 974 1766 ZMIZ1,ZMIZ1-AS1
SE_02_149900086 chr11:117427634-117544798 117164 86 33 3677 159 21 698 3642 DSCAML1,CEP164
SE_02_149900051 chr11:119666741-119797922 131181 51 43 3876 220 8 819 729 PVRL1,LOC102724301
SE_02_149900073 chr11:119831403-119909752 78349 73 16 2270 75 8 363 0 LOC102724301
SE_02_149900120 chr11:126098594-126119298 20704 120 9 693 40 5 119 0 CDON
SE_02_149900148 chr11:133927885-133966902 39017 148 13 1280 91 5 332 1357 IGSF9B,MIR4697HG,MIR4697
SE_02_149900119 chr11:69151885-69218060 66175 119 23 1962 109 7 150 0 LOC338694
SE_02_149900008 chr11:72291990-72432608 140618 8 47 3413 178 3 731 1436 CLPB,PHOX2A
SE_02_149900123 chr11:75280491-75353105 72614 123 22 1938 118 5 239 856 ARRB1,MIR326,TPBGL,RPS3,SNORD15A
SE_02_149900126 chr12:109590342-109679504 89162 126 32 2601 355 10 0 596 MVK,FAM222A,MMAB
SE_02_149900069 chr12:109696051-109777564 81513 69 45 2239 195 4 243 1468 FAM222A,FAM222A-AS1,TRPV4
SE_02_149900131 chr12:112791465-112855979 64514 131 26 1719 124 7 80 335 RPH3A
SE_02_149900111 chr12:124501177-124589663 88486 111 31 2797 93 9 185 407 NCOR2
SE_02_149900140 chr12:29212210-29288137 75927 140 26 2036 270 3 49 314 FAR2,LOC100506606
SE_02_149900161 chr12:39373340-39416132 42792 161 21 992 52 0 47 0 KIF21A
SE_02_149900042 chr13:35463800-35552427 88627 42 25 2097 58 14 471 525 MAB21L1,NBEA
SE_02_149900022 chr14:100383018-100449217 66199 22 29 1780 68 3 419 0 WDR25,WARS
SE_02_149900019 chr14:100638810-100740171 101361 19 46 3324 210 14 373 1129 DLK1,LINC00523
SE_02_149900054 chr14:100754027-100791512 37485 54 10 1192 41 2 159 0 DLK1,MIR2392,MEG3
SE_02_149900087 chr14:101807203-101889701 82498 87 30 2270 185 7 99 868 PPP2R5C
SE_02_149900053 chr14:104134042-104229925 95883 53 32 3653 211 6 431 3036 KIF26A,MIR203A,ASPG,MIR203B
SE_02_149900067 chr14:22471864-22561326 89462 67 30 2735 264 23 498 3397 ABHD4,DAD1
SE_02_149900055 chr14:35519882-35581586 61704 55 31 1307 62 2 433 969 RALGAPA1,INSM2
SE_02_149900092 chr14:61461181-61485834 24653 92 12 763 49 11 44 100 PRKCH,LOC101927780
SE_02_149900084 chr14:61552836-61624259 71423 84 18 1889 72 9 212 913 LOC101927780,FLJ22447
SE_02_149900034 chr14:76904031-77000865 96834 34 40 2748 151 5 257 0 LOC283575,IRF2BPL
SE_02_149900074 chr14:77013968-77070770 56802 74 17 1617 125 13 539 1304 IRF2BPL,LOC102724190,LOC283575,CIPC
SE_02_149900028 chr14:88787263-88857414 70151 28 19 1593 124 20 182 736 TTC8,EML5
SE_02_149900139 chr14:88939079-89001680 62601 139 14 2011 89 30 149 37 TTC8
SE_02_149900134 chr14:92906153-93047877 141724 134 48 4372 279 5 251 2617 ITPK1,CHGA,ITPK1-AS1
SE_02_149900091 chr14_KI270846v1_alt:316323-399689 83366 91 38 0 0 0 0 0 MIR4538,MIR4537,KIAA0125,MIR4507,MIR4539
SE_02_149900129 chr14_KI270847v1_alt:20726-162702 141976 129 42 0 0 0 0 0 ITPK1,CHGA
SE_02_149900059 chr15:37079672-37135279 55607 59 15 1328 8 4 718 841 MEIS2
SE_02_149900162 chr15:45163253-45200311 37058 162 10 914 112 1 188 1760 SHF,DUOX1,DUOX2,DUOXA1,DUOXA2
SE_02_149900171 chr15:77967401-78005631 38230 171 14 1695 232 3 173 1261 LOC91450,TBC1D2B,LOC645752
SE_02_149900173 chr15:78618064-78643931 25867 173 5 751 66 31 108 1622 CHRNB4,CHRNA3
SE_02_149900039 chr15:78667537-78710295 42758 39 12 1085 116 33 70 0 LOC646938,CHRNB4,CHRNA3
SE_02_149900155 chr15:78738451-78780278 41827 155 17 1638 226 11 237 2863 ADAMTS7,LOC646938
SE_02_149900145 chr15:98713165-98756305 43140 145 22 1356 44 37 200 0 IGF1R,MIR4714
SE_02_149900116 chr16:22952239-22977508 25269 116 12 754 59 1 57 0 HS3ST2
SE_02_149900031 chr16:57468759-57534163 65404 31 14 1947 173 6 291 2689 DOK4,CCDC102A,POLR2C,COQ9,ADGRG5,CIAPIN1
SE_02_149900128 chr16:70680655-70741999 61344 128 21 1887 181 1 290 1810 VAC14,MTSS1L,VAC14-AS1
SE_02_149900109 chr16:72188406-72222505 34099 109 13 882 108 5 206 0 PMFBP1
SE_02_149900132 chr16:72992158-73072169 80011 132 17 2266 70 10 700 430 ZFHX3,HCCAT5
SE_02_149900044 chr16:85144483-85272786 128303 44 58 5274 92 22 271 306 LOC400548,FAM92B,LINC00311,MIR5093
SE_02_149900122 chr16:85348695-85397975 49280 122 29 1919 11 2 91 0 MIR5093
SE_02_149900033 chr16:85512976-85653016 140040 33 48 5739 92 2 594 598 GSE1,GINS2
SE_02_149900152 chr17:40303311-40359080 55769 152 18 1281 70 0 770 2239 RARA-AS1,RARA,CDC6,GJD3
SE_02_149900170 chr17:42652879-42680943 28064 170 3 693 65 1 364 3140 PLEKHH3,CCR10,TUBG2,FAM134C,CNTNAP1,MIR6780A,TUBG1
SE_02_149900009 chr17:43231347-43324747 93400 9 45 628 84 0 8 359 RNU2-1,TMEM106A,LINC00854
SE_02_149900038 chr17:47978587-48024637 46050 38 18 1160 163 1 2 334 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152
SE_02_149900089 chr17:50903408-50973787 70379 89 20 1907 153 2 251 444 SPAG9,TOB1-AS1,TOB1
SE_02_149900112 chr17:55655030-55734436 79406 112 19 2336 37 9 216 408 TMEM100,PCTP
SE_02_149900015 chr17:57501424-57637367 135943 15 49 3947 115 10 938 503 LOC101927557,MSI2,LOC101927539
SE_02_149900082 chr17:61128869-61179872 51003 82 14 1224 32 2 371 45 BCAS3,TBX2-AS1
SE_02_149900007 chr17:63425687-63482058 56371 7 14 1618 67 4 171 2697 ACE,CYB561,TANC2,KCNH6
SE_02_149900048 chr17:66904370-67000299 95929 48 25 2833 119 8 290 166 CACNG4,CACNG5,CACNG1
SE_02_149900057 chr17:73281913-73369967 88054 57 32 2665 123 3 279 2968 CDC42EP4,SDK2,C17ORF80,CPSF4L,FAM104A
SE_02_149900043 chr17:76524452-76553949 29497 43 8 822 80 3 172 1925 PRCD,CYGB,SNORD1A,SNORD1B,SNHG16,RHBDF2,SNORD1C,ST6GALNAC2
SE_02_149900021 chr17:77350170-77481937 131767 21 47 4352 254 5 369 1596 SEPT9,MIR4316
SE_02_149900063 chr17:81302994-81347065 44071 63 15 1545 129 3 160 2078 TMEM105,LINC00482,LOC100130370,SLC38A10
SE_02_149900066 chr17:81386524-81449047 62523 66 22 2040 144 2 568 1974 BAHCC1,MIR4740,LOC100130370,MIR3186
SE_02_149900107 chr18:55286731-55354929 68198 107 31 1529 21 2 764 270 TCF4
SE_02_149900156 chr2:10326391-10405988 79597 156 34 2624 192 16 128 400 HPCAL1,SNORA80B,ODC1,LOC101929715
SE_02_149900002 chr2:15939370-15950350 10980 2 3 271 2 1 179 1020 MYCN,MYCNOS,MYCNUT
SE_02_149900013 chr2:15981648-15986875 5227 13 3 165 0 0 43 0 MYCN,MYCNOS
SE_02_149900003 chr2:16093275-16126903 33628 3 7 1039 4 1 110 0 GACAT3
SE_02_149900001 chr2:16155517-16227384 71867 1 18 2161 3 3 286 65 GACAT3
SE_02_149900004 chr2:16271267-16295124 23857 4 8 720 1 4 119 0 GACAT3
SE_02_149900005 chr2:16316071-16336399 20328 5 8 652 3 0 157 0 GACAT3
SE_02_149900011 chr2:16392025-16400633 8608 11 2 276 1 0 41 0 FAM49A
SE_02_149900149 chr2:207129118-207166110 36992 149 16 1015 63 5 323 189 KLF7,MIR2355,MIR7845
SE_02_149900068 chr2:219501411-219538411 37000 68 16 1063 60 0 540 2356 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_149900136 chr2:231642661-231717958 75297 136 20 2325 79 7 272 1070 PTMA,MIR1244-2,C2ORF57
SE_02_149900147 chr2:2319870-2333853 13983 147 1 386 6 0 186 421 MYT1L,MYT1L-AS1
SE_02_149900081 chr2:237858581-237898996 40415 81 20 1289 71 7 56 319 RAMP1
SE_02_149900133 chr2:29246287-29322212 75925 133 31 2202 131 10 295 461 ALK,CLIP4
SE_02_149900102 chr2:3099846-3132739 32893 102 16 1152 40 3 74 191 LINC01250
SE_02_149900127 chr2:42096144-42148861 52717 127 16 1710 137 5 189 0 LOC102723824,PKDCC,EML4
SE_02_149900096 chr2:43246585-43350353 103768 96 26 2930 200 15 181 513 THADA,LINC01126,ZFP36L2
SE_02_149900168 chr2:44638281-44716378 78097 168 25 2165 112 4 575 134 CAMKMT,SIX3-AS1
SE_02_149900118 chr2:46297362-46350894 53532 118 11 1618 67 62 269 274 EPAS1
SE_02_149900006 chr2:46986203-47098494 112291 6 48 4238 251 33 324 2307 TTC7A,C2ORF61,MCFD2
SE_02_149900037 chr2:47191369-47284974 93605 37 30 3127 86 12 153 288 LOC101927043,CALM2,C2ORF61
SE_02_149900041 chr20:32441436-32540406 98970 41 30 2591 173 2 631 2640 NOL4L,LOC101929698,LOC149950
SE_02_149900065 chr20:38860554-38894775 34221 65 12 922 63 4 84 214 PPP1R16B,FAM83D
SE_02_149900159 chr21:31136339-31186131 49792 159 16 1478 19 6 93 484 TIAM1,KRTAP19-8
SE_02_149900100 chr22:23500897-23566770 65873 100 34 2442 287 7 0 0 PCAT14,LOC388882,IGLL1
SE_02_149900035 chr22:24379155-24451610 72455 35 31 2112 159 7 194 2647 ADORA2A,ADORA2A-AS1,SPECC1L,SPECC1L-ADORA2A,UPB1
SE_02_149900058 chr22:35941215-36038365 97150 58 31 2386 76 3 272 199 RBFOX2
SE_02_149900165 chr22:45978791-46015845 37054 165 12 1260 62 0 64 920 LOC730668,WNT7B,LINC00899,PRR34-AS1,PRR34
SE_02_149900023 chr22:46062381-46088008 25627 23 1 750 27 2 172 131 MIRLET7BHG,PRR34,MIR3619,LINC00899,PRR34-AS1,MIRLET7A3,MIR4763,MIRLET7B
SE_02_149900117 chr3:119630388-119681235 50847 117 17 1427 211 2 121 1020 COX17,POPDC2,PLA1A,MAATS1
SE_02_149900016 chr3:128306933-128436667 129734 16 51 3625 260 22 359 534 EEFSEC,DNAJB8,DNAJB8-AS1
SE_02_149900098 chr3:128479794-128494194 14400 98 1 385 25 4 262 1510 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_149900088 chr3:133227820-133297764 69944 88 18 2007 142 14 55 372 TMEM108-AS1,TMEM108
SE_02_149900027 chr3:156350530-156449855 99325 27 46 2542 219 8 242 217 KCNAB1,KCNAB1-AS1
SE_02_149900036 chr3:159818525-159897233 78708 36 29 1794 66 6 364 645 IQCJ-SCHIP1,SCHIP1,IQCJ-SCHIP1-AS1
SE_02_149900125 chr3:29279818-29356325 76507 125 29 2045 52 9 233 105 RBMS3,RBMS3-AS3
SE_02_149900158 chr3:72288339-72340981 52642 158 23 1580 21 12 142 0 RYBP
SE_02_149900174 chr3:84959052-85006696 47644 174 22 1142 67 4 300 194 CADM2
SE_02_149900064 chr4:118884106-118971741 87635 64 27 2211 156 9 149 94 SYNPO2,SEC24D
SE_02_149900025 chr4:139754806-139969182 214376 25 64 5617 255 24 980 307 MAML3,MGST2
SE_02_149900060 chr4:150298115-150427605 129490 60 47 2995 240 6 741 368 LRBA,MAB21L2
SE_02_149900050 chr4:150566337-150601132 34795 50 6 736 33 2 512 945 MAB21L2,LRBA
SE_02_149900032 chr4:173505709-173541584 35875 32 4 1005 37 3 367 1419 HAND2-AS1,HAND2
SE_02_149900124 chr4:173869386-173881456 12070 124 1 317 1 0 89 0 HAND2-AS1
SE_02_149900052 chr4:173898624-173946907 48283 52 16 1274 37 3 289 0 LOC101928509
SE_02_149900046 chr4:173987379-174049761 62382 46 15 1757 86 4 232 0 LOC101928509
SE_02_149900040 chr4:174116633-174173252 56619 40 15 1674 122 3 263 40 LOC101928509
SE_02_149900105 chr4:174193164-174205774 12610 105 1 327 4 3 68 0 LOC101928509
SE_02_149900146 chr4:174260225-174270641 10416 146 1 237 17 1 18 59 FBXO8,CEP44,LOC101928509
SE_02_149900115 chr4:174270706-174289013 18307 115 1 419 21 1 38 172 CEP44,FBXO8
SE_02_149900018 chr4:41820663-41888258 67595 18 24 1765 77 3 660 364 LINC00682,TMEM33
SE_02_149900093 chr4:7875785-7956997 81212 93 29 2966 362 6 80 192 LOC389199,AFAP1,MIR95
SE_02_149900024 chr4:95504280-95554700 50420 24 19 1418 23 7 323 185 UNC5C
SE_02_149900072 chr5:139635889-139711493 75604 72 23 1755 108 7 1034 572 CXXC5,LOC101929696
SE_02_149900130 chr5:141679956-141759105 79149 130 28 2192 197 15 607 381 ARAP3,HDAC3,RELL2,FCHSD1
SE_02_149900172 chr5:141777923-141855845 77922 172 32 2116 220 15 748 443 PCDH1,LOC729080
SE_02_149900099 chr5:142149530-142192244 42714 99 16 1218 114 16 98 198 NDFIP1
SE_02_149900071 chr5:14387133-14471114 83981 71 26 2492 59 7 250 897 TRIO,FAM105A
SE_02_149900101 chr5:154467913-154489690 21777 101 6 571 34 5 171 451 HAND1,SAP30L,SAP30L-AS1
SE_02_149900157 chr5:154504880-154535097 30217 157 10 852 36 0 35 0 HAND1
SE_02_149900049 chr5:168749640-168857004 107364 49 45 3458 55 17 637 1413 MIR218-2,SLIT3,LOC101927969
SE_02_149900160 chr5:168875444-168918901 43457 160 21 1306 2 5 254 64 SLIT3,LOC728095
SE_02_149900113 chr5:51959708-52007809 48101 113 14 1215 15 1 129 0 LOC642366
SE_02_149900164 chr6:136952629-137000259 47630 164 25 1325 140 11 93 353 IL20RA,NHEG1,SLC35D3
SE_02_149900077 chr6:43876796-43973424 96628 77 43 2828 107 16 372 538 LINC01512,LOC101929705,C6ORF223
SE_02_149900075 chr6:51950821-52022354 71533 75 28 1739 73 5 368 174 PKHD1,MCM3
SE_02_149900045 chr7:103666976-103752032 85056 45 29 2751 209 2 308 213 RELN,SLC26A5
SE_02_149900103 chr7:108229441-108309530 80089 103 36 2169 134 4 306 178 NRCAM
SE_02_149900061 chr7:128347792-128389611 41819 61 17 1093 86 2 224 1236 PRRT4,IMPDH1,MGC27345,RBM28
SE_02_149900143 chr7:150934064-150989693 55629 143 20 1503 85 11 499 2903 KCNH2,ATG9B,ABCB8,NOS3
SE_02_149900056 chr7:19089036-19117734 28698 56 12 907 0 3 378 406 TWIST1,FERD3L
SE_02_149900090 chr7:40604212-40647085 42873 90 18 1086 24 7 153 0 SUGCT,LINC01450
SE_02_149900095 chr7:5554750-5671096 116346 95 30 4205 312 6 70 2224 FSCN1,RNF216,RNF216-IT1,MIR6874,FBXL18,ACTB,LOC221946
SE_02_149900108 chr7:66117214-66157820 40606 108 21 1144 149 5 36 633 CRCP,ASL,TPST1
SE_02_149900163 chr8:105552792-105660470 107678 163 32 2769 18 17 721 75 ZFPM2
SE_02_149900121 chr8:17647788-17705272 57484 121 21 2681 300 10 171 366 MTUS1,MIR548V
SE_02_149900085 chr8:24977910-25035161 57251 85 11 1604 63 4 52 0 NEFL,MIR6841
SE_02_149900144 chr8:55881663-55938771 57108 144 22 1662 200 9 56 0 LYN
SE_02_149900029 chr9:117301278-117415472 114194 29 51 3178 15 23 526 271 ASTN2
SE_02_149900020 chr9:126499427-126564693 65266 20 27 2010 116 8 277 977 MVB12B,LMX1B,NRON
SE_02_149900017 chr9:129381631-129507278 125647 17 52 3811 169 9 295 874 LINC00963,LINC01503
SE_02_149900169 chr9:133600520-133641024 40504 169 13 1399 115 14 93 273 DBH,DBH-AS1,FAM163B
SE_02_149900083 chr9:133813986-133957351 143365 83 50 5486 361 10 162 249 VAV2
SE_02_149900167 chr9:94862166-94875347 13181 167 5 322 15 1 73 0 C9ORF3,MIR2278
SE_02_149900150 chr9:94904107-94938582 34475 150 11 924 59 0 139 459 C9ORF3,MIR2278
SE_02_149900135 chr9:94995509-95031336 35827 135 13 922 54 0 129 569 C9ORF3,MIR6081
SE_02_149900078 chrX:115725276-115738997 13721 78 8 1 0 0 0 0 PLS3
SE_02_149900012 chrX:115843350-115892884 49534 12 18 212 10 0 0 0 DANT2
SE_02_149900141 chrX:40144962-40177595 32633 141 10 589 0 0 514 144 BCOR
SE_02_149900106 chrX:72067981-72129478 61497 106 21 1055 67 1 311 397 RGAG4,NHSL2,RPS26P11,FLJ44635

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM2113518
Input ID: Name:GSM2113520
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb