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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000253159
Gene: PCDHGA12 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:141430507-141512975 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_119300034 chr5:141474924-141497712 Sample_02_1193 Brain GBM27 34 1 493 53 2 99 1626 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_085700929 chr5:141475010-141490056 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 929 1 320 37 2 99 1140 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_118100876 chr5:141475108-141482018 Sample_02_1181 Brain GBM10 876 1 141 15 1 94 504 PCDHGB5,PCDHGA4,PCDHGA7,PCDHGB1,PCDHGA10,PCDHGA5,PCDHGC3,PCDHGA1,PCDHGA12,PCDHGB7,PCDHGA3,PCDHGA8,PCDHGA6,PCDHGB3,PCDHGB2,PCDHGA9,PCDHGA11,PCDHGB6,PCDHGA2,PCDHGB4,PCDHGC5,PCDHGC4,PCDHGB8P
SE_00_003800026 chr5:141475127-141526490 Sample_00_0038 Spinal cord spinal-cord_108d 26 10 1194 112 2 308 2775 PCDHGC4,PCDHGC3,PCDHGB3,PCDHGA1,PCDHGA2,PCDHGA11,PCDHGA8,PCDHGC5,PCDHGA10,PCDHGA12,PCDHGA4,PCDHGA9,PCDHGB6,DIAPH1,PCDHGA5,PCDHGB4,PCDHGB5,PCDHGB7,PCDHGA7,PCDHGB1,PCDHGA3,PCDHGA6,PCDHGB2,PCDHGB8P
SE_02_096300031 chr5:141475199-141500058 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 31 1 524 57 2 99 1626 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_121200008 chr5:141475302-141497499 Sample_02_1212 Brain GBM30 8 1 485 53 2 99 1626 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_00_002300079 chr5:141475384-141523336 Sample_00_0023 Embryo mesenchymal-stem-cell 79 5 1094 105 2 268 2639 PCDHGC4,PCDHGC3,PCDHGB3,PCDHGA1,PCDHGA2,PCDHGA11,PCDHGA8,PCDHGC5,PCDHGA10,PCDHGA12,PCDHGA4,PCDHGA9,PCDHGB6,DIAPH1,PCDHGA5,PCDHGB4,PCDHGB5,PCDHGB7,PCDHGA7,PCDHGB1,PCDHGA3,PCDHGA6,PCDHGB2,PCDHGB8P
SE_00_004300129 chr5:141475404-141526629 Sample_00_0043 Stomach stomach_96d 129 8 1194 112 2 307 2792 PCDHGC4,PCDHGC3,PCDHGB3,PCDHGA1,PCDHGA2,PCDHGA11,PCDHGA8,PCDHGC5,PCDHGA10,PCDHGA12,PCDHGA4,PCDHGA9,PCDHGB6,DIAPH1,PCDHGA5,PCDHGB4,PCDHGB5,PCDHGB7,PCDHGA7,PCDHGB1,PCDHGA3,PCDHGA6,PCDHGB2,PCDHGB8P
SE_02_117700485 chr5:141475425-141490870 Sample_02_1177 Brain GBM05 485 1 334 38 2 98 1275 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_085500040 chr5:141475445-141497858 Sample_02_0855 Glioblastoma Glioblastoma neurosphere cell_HF-2927 40 1 486 53 2 98 1626 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_003900313 chr5:141475485-141526605 Sample_02_0039 Embryo AFG 313 8 1192 112 2 307 2786 PCDHGC4,PCDHGC3,PCDHGB3,PCDHGA1,PCDHGA2,PCDHGA11,PCDHGA8,PCDHGC5,PCDHGA10,PCDHGA12,PCDHGA4,PCDHGA9,PCDHGB6,DIAPH1,PCDHGA5,PCDHGB4,PCDHGB5,PCDHGB7,PCDHGA7,PCDHGB1,PCDHGA3,PCDHGA6,PCDHGB2,PCDHGB8P
SE_02_117900041 chr5:141475498-141497094 Sample_02_1179 Brain GBM08 41 1 469 53 2 98 1626 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_119701013 chr5:141475516-141478975 Sample_02_1197 Brain GBM33 1013 1 64 8 1 87 501 PCDHGB5,PCDHGA4,PCDHGA7,PCDHGB1,PCDHGA10,PCDHGA5,PCDHGC3,PCDHGA1,PCDHGA12,PCDHGB7,PCDHGA3,PCDHGA8,PCDHGA6,PCDHGB3,PCDHGB2,PCDHGA9,PCDHGA11,PCDHGB6,PCDHGA2,PCDHGB4,PCDHGC5,PCDHGC4,PCDHGB8P
SE_02_001900018 chr5:141475664-141525676 Sample_02_0019 Embryo Neural crest cells 18 13 1173 111 2 300 2698 PCDHGC4,PCDHGC3,PCDHGB3,PCDHGA1,PCDHGA2,PCDHGA11,PCDHGA8,PCDHGC5,PCDHGA10,PCDHGA12,PCDHGA4,PCDHGA9,PCDHGB6,DIAPH1,PCDHGA5,PCDHGB4,PCDHGB5,PCDHGB7,PCDHGA7,PCDHGB1,PCDHGA3,PCDHGA6,PCDHGB2,PCDHGB8P
SE_02_096600120 chr5:141477256-141529671 Sample_02_0966 Brain H3.3K27M_JN29-BS3 120 18 1226 111 1 275 2749 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,DIAPH1,PCDHGB4,LOC100505658
SE_02_120400410 chr5:141477559-141529944 Sample_02_1204 Brain NB2 410 17 1227 111 1 271 2740 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,DIAPH1,PCDHGB4,LOC100505658
SE_02_096700138 chr5:141477603-141529914 Sample_02_0967 Brain H3.3K27M_JN57 138 20 1227 111 1 271 2731 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,DIAPH1,PCDHGB4,LOC100505658
SE_02_087700050 chr5:141477878-141529703 Sample_02_0877 Muscle SMS-CTR_CASZ1b_Dox 50 14 1221 111 1 264 2648 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,DIAPH1,PCDHGB4,LOC100505658
SE_02_104601905 chr5:141478293-141517003 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1905 16 919 89 1 163 2144 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,DIAPH1,PCDHGB4,LOC100505658
SE_02_120300701 chr5:141478380-141529362 Sample_02_1203 Brain NB1 701 13 1200 110 1 250 2524 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,DIAPH1,PCDHGB4,LOC100505658,HDAC3,TAF7,ARAP3
SE_02_115200099 chr5:141478736-141533422 Sample_02_1152 Lymphoma RL_WT_gRNA1 99 9 1290 115 1 244 2543 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,DIAPH1,PCDHGB4,LOC100505658
SE_02_033400137 chr5:141479157-141530062 Sample_02_0334 Haematopoietic and lymphoid tissue MOLM14_CA25_11 137 4 1203 108 1 238 2523 PCDHGC4,PCDHGB3,PCDHGA1,PCDHGC3,PCDHGA2,PCDHGA11,PCDHGA8,PCDHGC5,PCDHGA10,PCDHGA12,PCDHGA4,PCDHGA9,PCDHGB6,DIAPH1,PCDHGA5,PCDHGB4,PCDHGB5,PCDHGB7,PCDHGA7,PCDHGB1,PCDHGA3,PCDHGA6,PCDHGB2
SE_02_073900098 chr5:141479319-141533122 Sample_02_0739 Blood Nalm6 98 8 1277 114 1 239 2523 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,DIAPH1,PCDHGB4,LOC100505658,RELL2
SE_02_075800081 chr5:141479732-141530120 Sample_02_0758 Peripheral blood REH 81 14 1197 105 1 238 2523 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,DIAPH1,PCDHGB4,LOC100505658
SE_02_109700375 chr5:141480002-141528459 Sample_02_1097 Haematopoietic and lymphoid tissue 697 375 23 1154 103 1 218 2350 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,DIAPH1,PCDHGB4,LOC100505658
SE_02_088500123 chr5:141480120-141530867 Sample_02_0885 Blood NALM6_2 123 8 1206 105 1 236 2523 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,DIAPH1,PCDHGB4,LOC100505658,RELL2
Genomic distribution of SEs associated with PCDHGA12
Genome Browser

The strength of the tissue affected by the gene

Expression of PCDHGA12

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)