SEdb 2.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_096300031
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: H3.3K27M_Tumor-derived cell-line_G477p6_cells
Genomic region: chr5:141475199-141500058
Size: 24859
Super-enhancer rank 31
Number of SE elements: 1
ChIP density(Case|Control): 112864.8318|1866.9109
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PCDHGC5;
ROSE Overlap PCDHGB5; PCDHGB1; PCDHGC4; PCDHGA1; PCDHGA6; PCDHGB2; PCDHGA2; PCDHGA4; PCDHGB3; PCDHGC3; PCDHGA3; PCDHGA11; PCDHGA8; PCDHGA10; PCDHGA12; PCDHGA9; PCDHGB6; PCDHGA7; PCDHGC5; PCDHGA5; PCDHGB7; PCDHGB4;
ROSE Proximal PCDHGA12; PCDHGB8P;
ROSE Closest PCDHGC5;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_096300031 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers