SEdb 2.0
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Super-enhancer overview

SE ID: SE_00_002300079
Species: Human
Data source: Roadmap
Biosample type: In vitro differentiated cell
Tissue type: Embryo
Biosample name: mesenchymal-stem-cell
Genomic region: chr5:141475384-141523336
Size: 47952
Super-enhancer rank 79
Number of SE elements: 5
ChIP density(Case|Control): 32175.792|6027.5664
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PCDHGC5;
ROSE Overlap PCDHGC4; PCDHGC3; PCDHGB3; PCDHGA1; PCDHGA2; PCDHGA11; PCDHGA8; PCDHGC5; PCDHGA10; PCDHGA12; PCDHGA4; PCDHGA9; PCDHGB6; DIAPH1; PCDHGA5; PCDHGB4; PCDHGB5; PCDHGB7; PCDHGA7; PCDHGB1; PCDHGA3; PCDHGA6; PCDHGB2;
ROSE Proximal PCDHGB8P; PCDHGA12;
ROSE Closest PCDHGC5;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_00_002300079 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers