SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000107614
Gene: TRDMT1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr10:17137336-17202054 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_002000969 chr10:17100965-17156605 Sample_00_0020 Large intestine large-intestine_108d 969 9 1724 225 12 137 1316 TRDMT1,CUBN
SE_02_075400084 chr10:17114325-17163602 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 84 10 1539 216 10 128 1190 TRDMT1,CUBN
SE_02_040100052 chr10:17151296-17239348 Sample_02_0401 Mammary gland SUM159PT-T47D 52 17 2565 370 14 227 1474 VIM,TRDMT1,CUBN
SE_02_008700156 chr10:17170520-17259609 Sample_02_0087 Pancreas MiaPaca2 156 6 2593 335 13 223 1022 VIM,TRDMT1,CUBN
SE_02_155500362 chr10:17171247-17215465 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 362 8 1279 234 9 62 243 VIM-AS1,TRDMT1,VIM,CUBN
SE_01_008700192 chr10:17174070-17239436 Sample_01_0087 Thyroid gland thyroid-gland 192 10 1875 267 12 190 1022 VIM,TRDMT1,CUBN
SE_02_067200414 chr10:17174552-17221284 Sample_02_0672 Endometrium endometrium cancer_DSG 414 9 1349 236 11 73 266 VIM-AS1,TRDMT1,VIM,CUBN
SE_02_067400451 chr10:17175242-17217271 Sample_02_0674 Endometrium E1_FA 451 8 1215 219 10 66 245 VIM-AS1,TRDMT1,VIM,CUBN
SE_02_154300253 chr10:17187657-17211247 Sample_02_1543 Gastrointestinal Stromal GIST-48 253 6 704 141 6 27 159 TRDMT1,VIM,VIM-AS1
SE_01_008800094 chr10:17189678-17240300 Sample_01_0088 Tibial nerve tibial-nerve 94 5 1469 184 7 170 989 VIM,TRDMT1
SE_01_008600210 chr10:17190311-17244678 Sample_01_0086 Thoracic aorta thoracic-aorta 210 8 1575 198 8 181 989 VIM,TRDMT1
SE_01_007000203 chr10:17190668-17244519 Sample_01_0070 Ascending aorta ascending-aorta 203 10 1567 198 8 181 989 VIM,TRDMT1
SE_02_118100766 chr10:17190970-17217145 Sample_02_1181 Brain GBM10 766 5 768 136 5 51 245 VIM-AS1,TRDMT1,VIM
SE_01_005700387 chr10:17195189-17220039 Sample_01_0057 Pancreas duct PANC-1 387 1 718 122 5 52 245 TRDMT1,VIM
SE_02_013800031 chr10:17195498-17240346 Sample_02_0138 Brain RT172 31 4 1292 154 6 170 989 VIM,TRDMT1
SE_02_026300109 chr10:17195605-17235670 Sample_02_0263 Osteoblastic hFOB_undifferentiated 109 8 1161 145 5 155 881 VIM,TRDMT1
SE_01_007300236 chr10:17195698-17239792 Sample_01_0073 Coronary artery coronary-artery 236 8 1266 153 6 170 989 VIM,TRDMT1
SE_02_043300096 chr10:17195869-17239598 Sample_02_0433 Lung NCI-H1299_EGFP-NEO_reporter_cells_DAC 96 10 1255 152 6 170 989 VIM,TRDMT1
SE_01_007200374 chr10:17195911-17239574 Sample_01_0072 Breast epithelium breast-epithelium 374 5 1254 152 6 170 989 VIM,TRDMT1
SE_02_127200137 chr10:17195955-17218975 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 137 21 665 118 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_025800084 chr10:17195971-17239480 Sample_02_0258 Lung NCI-H1299_EGFP-NEO_reporter_cells_DMSO 84 12 1249 150 6 170 989 VIM,TRDMT1
SE_02_094901003 chr10:17196043-17218093 Sample_02_0949 Umbilical artery HUAEC_WT 1003 8 636 113 4 52 245 VIM-AS1,TRDMT1,VIM
SE_02_058000828 chr10:17196225-17217661 Sample_02_0580 Blood HEL_sgSIK3e4 828 5 616 109 4 51 245 VIM-AS1,TRDMT1,VIM
SE_02_072300186 chr10:17196396-17221586 Sample_02_0723 Pancreas MIAPaca2 WT 186 1 731 119 5 54 245 VIM-AS1,TRDMT1,VIM
SE_02_030100355 chr10:17196480-17236769 Sample_02_0301 Neuroblastoma GIMEN 355 6 1163 141 5 157 950 VIM,TRDMT1
SE_02_057600809 chr10:17196512-17218215 Sample_02_0576 Blood HEL_sgLKB1e2 809 5 626 111 4 52 245 VIM-AS1,TRDMT1,VIM
SE_02_057900783 chr10:17196561-17221209 Sample_02_0579 Blood HEL_sgNeg2 783 7 719 119 5 54 245 VIM-AS1,TRDMT1,VIM
SE_02_045300325 chr10:17196674-17219480 Sample_02_0453 Neuroblastoma SJNB3 325 1 658 116 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_032300038 chr10:17197877-17232841 Sample_02_0323 Colon RKO 38 2 1019 135 5 128 697 VIM,TRDMT1
SE_02_041100140 chr10:17198004-17258663 Sample_02_0411 Liver TTC549_untreated 140 7 1774 194 7 203 989 VIM,TRDMT1
SE_02_059400041 chr10:17198060-17239623 Sample_02_0594 iPSC-derived neural progenitors 41 1 1201 143 6 170 989 VIM-AS1,VIM,TRDMT1
SE_02_098100094 chr10:17198064-17202632 Sample_02_0981 Brain H3.3K27M-KO_BT245-C4P6 94 1 134 28 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_043000050 chr10:17198224-17234181 Sample_02_0430 Kidney 12364284 50 15 1041 131 5 145 771 VIM,TRDMT1
SE_02_011000123 chr10:17198235-17239804 Sample_02_0110 Ovaries IOE11 123 4 1195 141 6 170 989 VIM,TRDMT1
SE_02_097300110 chr10:17198243-17202639 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 110 1 127 25 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_041200111 chr10:17198294-17258550 Sample_02_0412 Liver TTC549_Doxycycline 111 8 1755 188 7 203 989 VIM,TRDMT1
SE_02_017900152 chr10:17198327-17239597 Sample_02_0179 Urinary bladder T24 152 7 1187 140 6 170 989 VIM,TRDMT1
SE_02_025900130 chr10:17198353-17239460 Sample_02_0259 Lung NCI-H1299_EGFP-NEO_reporter_cells_SAHA 130 8 1184 140 6 170 989 VIM,TRDMT1
SE_02_041000182 chr10:17198374-17239716 Sample_02_0410 Brain BT16_NoDox 182 4 1191 139 6 170 989 VIM,TRDMT1
SE_02_017100047 chr10:17198374-17240009 Sample_02_0171 Lung IMR-90_proliferating 47 2 1196 140 6 170 989 VIM,TRDMT1
SE_02_030500076 chr10:17198377-17239624 Sample_02_0305 Neuroblastoma SH-EP 76 7 1190 139 6 170 989 VIM,TRDMT1
SE_02_040700208 chr10:17198380-17239817 Sample_02_0407 Brain BT16 208 5 1192 140 6 170 989 VIM,TRDMT1
SE_02_028000088 chr10:17198424-17234182 Sample_02_0280 Mammary gland SUM159_DMSO_24h 88 5 1037 130 5 145 771 VIM,TRDMT1
SE_02_031000212 chr10:17198425-17233501 Sample_02_0310 Neuroblastoma SJNB8 212 4 1013 129 5 129 704 VIM,TRDMT1
SE_02_026100365 chr10:17198491-17236529 Sample_02_0261 Osteoblastic hFOB_differentiated 365 5 1104 132 5 157 946 VIM,TRDMT1
SE_02_103400742 chr10:17198497-17202713 Sample_02_1034 Blood AML cell 742 1 124 24 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_010800008 chr10:17198593-17235028 Sample_02_0108 Fallopian tube FT246 8 5 1064 131 5 152 817 VIM,TRDMT1
SE_02_010700086 chr10:17198602-17239775 Sample_02_0107 Endometrium EEC16 86 5 1189 140 6 170 989 VIM,TRDMT1
SE_02_031100278 chr10:17198610-17236672 Sample_02_0311 Neuroblastoma SK-N-AS 278 5 1105 132 5 157 950 VIM,TRDMT1
SE_02_001000119 chr10:17198612-17239772 Sample_02_0010 Kidney A-498_emptyvector 119 10 1189 140 6 170 989 VIM,TRDMT1
SE_02_042900147 chr10:17198635-17231845 Sample_02_0429 Kidney 12364284_VHL+ 147 15 974 127 5 127 697 VIM,TRDMT1
SE_02_031700189 chr10:17198641-17239810 Sample_02_0317 Neuroblastoma GICAN 189 4 1187 137 6 170 989 VIM,TRDMT1
SE_02_026700133 chr10:17198648-17232495 Sample_02_0267 Kidney 786-O 133 10 987 126 5 127 697 VIM,TRDMT1
SE_02_042800084 chr10:17198657-17258040 Sample_02_0428 Kidney 12364284_VHL- 84 18 1732 183 7 202 989 VIM,TRDMT1
SE_02_026800111 chr10:17198658-17239197 Sample_02_0268 Kidney A-498 111 13 1171 135 6 170 989 VIM,TRDMT1
SE_02_024300193 chr10:17198683-17239773 Sample_02_0243 Foreskin foreskin_HFFs 193 7 1187 137 6 170 989 VIM,TRDMT1
SE_02_017200131 chr10:17198688-17258164 Sample_02_0172 Lung IMR-90_quiescent 131 7 1733 183 7 202 989 VIM,TRDMT1
SE_02_096500663 chr10:17198694-17202778 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 663 1 122 21 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_010100079 chr10:17198702-17235019 Sample_02_0101 Peripheral blood Macrophages_GM-CSF_72h_IFN-y 79 3 1062 128 5 152 816 VIM,TRDMT1
SE_02_020900047 chr10:17198707-17232571 Sample_02_0209 Lung MRC-5_MRC5_1DPT 47 9 990 126 5 127 697 VIM,TRDMT1
SE_02_039900093 chr10:17198733-17234526 Sample_02_0399 Mammary gland SUM159PT-BT-474 93 5 1040 127 5 145 772 VIM,TRDMT1
SE_01_001800077 chr10:17198737-17239852 Sample_01_0018 Submandibular Salivary Gland ACC112 77 6 1185 136 6 170 989 VIM,TRDMT1
SE_01_008100931 chr10:17198739-17239334 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 931 4 1173 135 6 170 989 VIM,TRDMT1
SE_02_084600258 chr10:17198744-17219901 Sample_02_0846 Mammary gland MDA-MB-231_untreat 258 8 614 104 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_040800503 chr10:17198768-17232995 Sample_02_0408 Kidney G401_Dox 503 4 994 125 5 128 697 VIM,TRDMT1
SE_02_010200055 chr10:17198781-17236715 Sample_02_0102 Peripheral blood Macrophages_GM-CSF_72h_IL4 55 6 1100 128 5 157 950 VIM,TRDMT1
SE_02_026000137 chr10:17198787-17239338 Sample_02_0260 Lung NCI-H1299_EGFP-NEO_reporter_cells_SB939 137 16 1172 135 6 170 989 VIM,TRDMT1
SE_01_008500576 chr10:17198806-17236499 Sample_01_0085 Stomach stomach 576 4 1095 128 5 157 944 VIM,TRDMT1
SE_02_023401119 chr10:17198808-17239610 Sample_02_0234 Tonsil Th17 1119 8 1179 135 6 170 989 VIM,TRDMT1
SE_02_011200138 chr10:17198812-17239080 Sample_02_0112 Connective tissue HT1080_untreated 138 6 1166 134 6 170 989 VIM,TRDMT1
SE_02_158401462 chr10:17198817-17202464 Sample_02_1584 Brain U87 GBM_Mock 1462 1 109 20 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_015000097 chr10:17198817-17238478 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 97 7 1144 132 6 167 989 VIM,TRDMT1
SE_01_005600094 chr10:17198819-17239783 Sample_01_0056 Bone osteoblast 94 6 1182 136 6 170 989 VIM,TRDMT1
SE_02_136800321 chr10:17198822-17203965 Sample_02_1368 Pancreas MIA PaCa-2-untreated 321 1 160 35 2 9 159 TRDMT1,VIM,VIM-AS1
SE_02_093100484 chr10:17198829-17202862 Sample_02_0931 Embryo H9 UTXKO 484 1 118 20 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_040200122 chr10:17198829-17233812 Sample_02_0402 Mammary gland SUM159PT-ZR-75-1 122 6 1014 125 5 135 735 VIM,TRDMT1
SE_02_156601064 chr10:17198832-17202750 Sample_02_1566 Dermal Dermal fibroblast 1064 1 116 20 2 7 159 TRDMT1,VIM,VIM-AS1
SE_01_007400540 chr10:17198840-17235661 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 540 3 1075 127 5 155 881 VIM,TRDMT1
SE_02_026500079 chr10:17198850-17235740 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 79 7 1076 127 5 155 884 VIM,TRDMT1
SE_01_009000311 chr10:17198859-17239640 Sample_01_0090 Lung upper-lobe-of-left-lung 311 4 1180 135 6 170 989 VIM,TRDMT1
SE_02_026200384 chr10:17198867-17233936 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 384 5 1019 125 5 145 751 VIM,TRDMT1
SE_02_042200132 chr10:17198870-17239443 Sample_02_0422 Lung NCI-H1299_EGFP-NEO_reporter_cells_DACSB 132 5 1173 135 6 170 989 VIM,TRDMT1
SE_01_008300497 chr10:17198877-17235266 Sample_01_0083 Sigmoid colon sigmoid-colon 497 3 1065 127 5 153 844 VIM,TRDMT1
SE_02_040000110 chr10:17198884-17232293 Sample_02_0400 Mammary gland SUM159PT-MCF-7 110 3 975 123 5 127 697 VIM,TRDMT1
SE_02_001100262 chr10:17198884-17239968 Sample_02_0011 Kidney A-498_wtVHL 262 15 1184 136 6 170 989 VIM,TRDMT1
SE_02_031600299 chr10:17198891-17233509 Sample_02_0316 Neuroblastoma CHP212 299 5 1003 125 5 129 705 VIM,TRDMT1
SE_01_003700473 chr10:17198896-17231629 Sample_01_0037 Liver hepatocyte 473 3 964 123 5 127 697 VIM,TRDMT1
SE_02_145200691 chr10:17198900-17202317 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 691 1 104 20 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_074500767 chr10:17198904-17212964 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 767 4 423 87 3 27 159 TRDMT1,VIM,VIM-AS1
SE_02_145100709 chr10:17198908-17202206 Sample_02_1451 Arter pulmonary arterial smooth muscle cells_PAH1_sictrl 709 1 102 17 2 7 153 TRDMT1,VIM,VIM-AS1
SE_02_015100064 chr10:17198908-17236947 Sample_02_0151 Mammary gland MDA-MB-231_TA1del 64 6 1102 129 5 158 950 VIM,TRDMT1
SE_02_018000349 chr10:17198909-17230920 Sample_02_0180 melanoma CJM 349 8 946 122 5 112 697 VIM,TRDMT1
SE_02_041900167 chr10:17198914-17233657 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 167 15 1008 125 5 134 713 VIM,TRDMT1
SE_02_007600234 chr10:17198919-17232834 Sample_02_0076 Autonomic ganglia SH-SY5Y_DMSO_3h 234 5 988 124 5 128 697 VIM,TRDMT1
SE_02_039500140 chr10:17198922-17231842 Sample_02_0395 Mammary gland BT-549 140 4 966 122 5 127 697 VIM,TRDMT1
SE_02_005400096 chr10:17198923-17239678 Sample_02_0054 Lung IMR-90_DMSO_1 96 6 1179 134 6 170 989 VIM,TRDMT1
SE_01_009500825 chr10:17198925-17203558 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 825 1 150 31 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_005700361 chr10:17198929-17233080 Sample_02_0057 Mammary gland vHMEC 361 4 994 124 5 128 697 VIM,TRDMT1
SE_01_001900055 chr10:17198934-17239000 Sample_01_0019 Brain and spinal cord astrocyte 55 7 1160 133 6 170 989 VIM,TRDMT1
SE_02_044800256 chr10:17198936-17202810 Sample_02_0448 Bone MNNG 256 1 114 19 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_035900421 chr10:17198936-17231634 Sample_02_0359 Colon Colo741 421 5 961 122 5 127 697 VIM,TRDMT1
SE_01_006600086 chr10:17198936-17239734 Sample_01_0066 Smooth muscle smooth-muscle-cell 86 6 1178 134 6 170 989 VIM,TRDMT1
SE_02_018200144 chr10:17198941-17232738 Sample_02_0182 melanoma LOX-IMVI 144 10 984 124 5 127 697 VIM,TRDMT1
SE_02_057100472 chr10:17198942-17218952 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 472 7 585 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_026400088 chr10:17198944-17231724 Sample_02_0264 Skeletal muscle 7250-empty 88 5 963 122 5 127 697 VIM,TRDMT1
SE_02_019400138 chr10:17198966-17232495 Sample_02_0194 Kidney Patient_x750T 138 3 978 124 5 127 697 VIM,TRDMT1
SE_02_010000053 chr10:17198969-17232292 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 53 5 971 122 5 127 697 VIM,TRDMT1
SE_02_024400209 chr10:17198977-17233898 Sample_02_0244 Foreskin foreskin_D11 209 5 1014 124 5 144 744 VIM,TRDMT1
SE_02_042000086 chr10:17198979-17233898 Sample_02_0420 Pectoralis major muscle LHCN-M2_dox_6h 86 9 1014 124 5 144 744 VIM,TRDMT1
SE_02_145500646 chr10:17198985-17202284 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 646 1 99 18 2 7 159 TRDMT1,VIM,VIM-AS1
SE_01_009100380 chr10:17198987-17234677 Sample_01_0091 Uterus uterus 380 4 1040 126 5 145 778 VIM,TRDMT1
SE_02_077101072 chr10:17198992-17218219 Sample_02_0771 Ovary OVCA429_shGRHL2 1072 10 559 97 4 52 245 VIM-AS1,TRDMT1,VIM
SE_02_007400376 chr10:17198992-17231596 Sample_02_0074 Other 90-8TL_PDJQ 376 4 960 122 5 127 697 VIM,TRDMT1
SE_02_018300176 chr10:17198994-17231555 Sample_02_0183 Skin SKMEL2 176 7 959 122 5 121 697 VIM,TRDMT1
SE_02_005500131 chr10:17198996-17239645 Sample_02_0055 Lung IMR-90_Nutlin-3a 131 6 1176 134 6 170 989 VIM,TRDMT1
SE_02_021000095 chr10:17199002-17231744 Sample_02_0210 Lung MRC-5_N_1DPT 95 8 962 122 5 127 697 VIM,TRDMT1
SE_02_004000456 chr10:17199004-17231741 Sample_02_0040 Embryo PFG 456 8 962 122 5 127 697 VIM,TRDMT1
SE_01_002600136 chr10:17199006-17233095 Sample_01_0026 Umbilical vein endothelial-cell-of-umbilical-vein 136 3 991 124 5 128 697 VIM,TRDMT1
SE_02_018100357 chr10:17199008-17230817 Sample_02_0181 melanoma COLO679 357 6 939 121 5 111 688 VIM,TRDMT1
SE_02_011100146 chr10:17199009-17233068 Sample_02_0111 Ovaries IOE4 146 5 990 124 5 128 697 VIM,TRDMT1
SE_02_007300100 chr10:17199012-17237584 Sample_02_0073 Other 90-8TL_DMSO 100 11 1117 130 6 167 981 VIM,TRDMT1
SE_02_126401572 chr10:17199020-17202380 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1572 1 102 19 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_001300113 chr10:17199022-17232247 Sample_02_0013 Kidney 786-O_HIF2A 113 12 970 122 5 127 697 VIM,TRDMT1
SE_02_018400427 chr10:17199023-17231389 Sample_02_0184 Skin SKMEL30 427 4 953 122 5 115 697 VIM,TRDMT1
SE_02_011300086 chr10:17199029-17231763 Sample_02_0113 Connective tissue HT1080_DOX5d 86 4 961 122 5 127 697 VIM,TRDMT1
SE_02_027400104 chr10:17199029-17233150 Sample_02_0274 Endometriosis hTERT_KD 104 5 990 124 5 128 697 VIM,TRDMT1
SE_02_145400723 chr10:17199030-17202269 Sample_02_1454 Arter pulmonary arterial smooth muscle cells_PAH1_sialdh1a3 723 1 98 18 2 7 159 TRDMT1,VIM,VIM-AS1
SE_00_001000708 chr10:17199048-17203141 Sample_00_0010 Embryo endodermal-cell 708 1 132 27 2 7 159 TRDMT1,VIM
SE_02_010300172 chr10:17199053-17231539 Sample_02_0103 Peripheral blood Macrophages_GM-CSF_72h_TNF-a_PGE2_Pam3CSK4 172 5 957 122 5 118 697 VIM,TRDMT1
SE_02_154800389 chr10:17199060-17217868 Sample_02_1548 Gastrointestinal Stromal GIST-226 389 11 551 97 4 51 245 VIM-AS1,TRDMT1,VIM
SE_02_093200656 chr10:17199064-17203433 Sample_02_0932 Embryo H9 WT_1 656 1 142 30 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_018500478 chr10:17199068-17230804 Sample_02_0185 Skin UACC257 478 7 938 121 5 111 687 VIM,TRDMT1
SE_01_007500360 chr10:17199069-17235982 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 360 5 1080 126 5 155 903 VIM,TRDMT1
SE_02_001200098 chr10:17199082-17232328 Sample_02_0012 Kidney 786-O_non-targeting 98 14 971 123 5 127 697 VIM,TRDMT1
SE_02_086700837 chr10:17199090-17221359 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 837 17 654 105 5 54 245 VIM-AS1,TRDMT1,VIM
SE_01_007700625 chr10:17199092-17239557 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 625 4 1169 134 6 170 989 VIM,TRDMT1
SE_02_008100285 chr10:17199095-17236032 Sample_02_0081 Blood Monocyte-derived_dendritic_cells 285 7 1082 126 5 155 904 VIM,TRDMT1
SE_02_150500194 chr10:17199096-17221319 Sample_02_1505 Brain SHEP with tetracycline inducible MYC_DOX_2HR 194 13 654 105 5 54 245 VIM-AS1,TRDMT1,VIM
SE_02_057000517 chr10:17199100-17218513 Sample_02_0570 Brain LN229_10_mM_glucose 517 6 567 99 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_153400245 chr10:17199102-17219263 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 245 6 589 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_028200198 chr10:17199102-17231423 Sample_02_0282 Lung IMR-90 198 6 955 122 5 115 697 VIM,TRDMT1
SE_01_004500216 chr10:17199102-17239000 Sample_01_0045 Mammary gland mammary-epithelial-cell 216 6 1157 133 6 170 989 VIM,TRDMT1
SE_01_006300371 chr10:17199106-17233113 Sample_01_0063 Skeletal muscle skeletal-muscle-myoblast 371 4 990 124 5 128 697 VIM,TRDMT1
SE_02_008800084 chr10:17199111-17239582 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 84 7 1170 134 6 170 989 VIM,TRDMT1
SE_02_042300483 chr10:17199117-17232286 Sample_02_0423 Skin A375 483 8 970 122 5 127 697 VIM,TRDMT1
SE_02_009100061 chr10:17199118-17231388 Sample_02_0091 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_0 61 4 953 122 5 115 697 VIM,TRDMT1
SE_01_008400305 chr10:17199119-17239540 Sample_01_0084 Spleen spleen 305 6 1168 134 6 170 989 VIM,TRDMT1
SE_02_037000388 chr10:17199121-17231476 Sample_02_0370 Skeletal muscle RH4 388 6 955 122 5 116 697 VIM,TRDMT1
SE_02_130900620 chr10:17199130-17202608 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 620 1 107 19 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_017300214 chr10:17199133-17232621 Sample_02_0173 Lung IMR-90_senescent 214 9 980 124 5 127 697 VIM,TRDMT1
SE_02_021100368 chr10:17199134-17231776 Sample_02_0211 Lung MRC-5_NFD_1DPT 368 6 960 122 5 127 697 VIM,TRDMT1
SE_02_124100693 chr10:17199141-17217250 Sample_02_1241 Skin MCC26_virus_negative 693 9 528 92 4 51 245 VIM-AS1,TRDMT1,VIM
SE_02_055600718 chr10:17199142-17217584 Sample_02_0556 iPSCs BOFS hiPSC cl1 718 2 539 93 4 51 245 VIM-AS1,TRDMT1,VIM
SE_02_022200419 chr10:17199142-17232473 Sample_02_0222 Blood DU-528 419 5 976 124 5 127 697 VIM,TRDMT1
SE_02_074400315 chr10:17199148-17213240 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 315 7 426 87 3 27 159 TRDMT1,VIM,VIM-AS1
SE_01_006900590 chr10:17199150-17234769 Sample_01_0069 Adrenal gland adrenal-gland 590 4 1038 126 5 148 790 VIM,TRDMT1
SE_02_072400251 chr10:17199153-17217741 Sample_02_0724 Pancreatic duct AsPC1_GFP_DOX 251 3 541 94 4 51 245 VIM-AS1,TRDMT1,VIM
SE_01_009200433 chr10:17199159-17235836 Sample_01_0092 Vagina vagina 433 5 1076 126 5 155 888 VIM,TRDMT1
SE_02_083800424 chr10:17199163-17202656 Sample_02_0838 Embryo hNPCs_WT 424 1 107 19 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_093400538 chr10:17199165-17202822 Sample_02_0934 Embryo H7-WT 538 1 110 19 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_084700077 chr10:17199169-17219038 Sample_02_0847 Mammary gland LM2-4175 77 8 583 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_098200590 chr10:17199170-17202361 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 590 1 99 19 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_079900433 chr10:17199172-17218956 Sample_02_0799 Brain MESMN1 433 5 581 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_024200939 chr10:17199180-17231597 Sample_02_0242 Colon V481 939 4 957 122 5 127 697 VIM,TRDMT1
SE_02_080100492 chr10:17199183-17217555 Sample_02_0801 Brain 2235 492 3 536 92 4 51 245 VIM-AS1,TRDMT1,VIM
SE_02_006800560 chr10:17199191-17234178 Sample_02_0068 Skin A375_DMSO 560 7 1020 125 5 145 771 VIM,TRDMT1
SE_01_011700131 chr10:17199195-17219013 Sample_01_0117 Lung fibroblast of lung 131 4 582 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_098000264 chr10:17199203-17202244 Sample_02_0980 Brain BT245 264 1 94 16 2 7 158 TRDMT1,VIM,VIM-AS1
SE_02_130800774 chr10:17199205-17202640 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 774 1 106 19 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_137900799 chr10:17199213-17202481 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 799 1 102 19 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_132500601 chr10:17199216-17202062 Sample_02_1325 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M_WT 601 1 88 15 2 7 135 TRDMT1,VIM,VIM-AS1
SE_02_053100199 chr10:17199216-17219071 Sample_02_0531 Mammary gland MDA-MB-231 199 8 582 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_072000333 chr10:17199218-17217603 Sample_02_0720 Pancreas AsPC1_TP63dN_DOX 333 3 537 93 4 51 245 VIM-AS1,TRDMT1,VIM
SE_02_143000213 chr10:17199221-17202558 Sample_02_1430 Blood Kasumi-3_mock-infected 213 1 105 19 2 7 159 TRDMT1,VIM,VIM-AS1
SE_01_008900515 chr10:17199222-17234891 Sample_01_0089 Transverse colon transverse-colon 515 3 1042 126 5 152 810 VIM,TRDMT1
SE_02_126701181 chr10:17199225-17202534 Sample_02_1267 Bone Im-GCT-4072_G34W 1181 1 105 19 2 7 159 TRDMT1,VIM,VIM-AS1
SE_02_074100506 chr10:17199233-17219087 Sample_02_0741 Muscle RH30 506 7 582 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_043700419 chr10:17199245-17217499 Sample_02_0437 Bone 143B 419 6 534 92 4 51 245 VIM-AS1,TRDMT1,VIM
SE_02_158300853 chr10:17199247-17219008 Sample_02_1583 Fetal lung IMR90_empty_GM 853 11 581 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_062000213 chr10:17199249-17217609 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 213 4 538 93 4 51 245 VIM-AS1,TRDMT1,VIM
SE_02_063800754 chr10:17199252-17219502 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 754 9 592 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_027000166 chr10:17199254-17230895 Sample_02_0270 Kidney PCS-400 166 10 937 121 5 112 697 VIM,TRDMT1
SE_02_000800147 chr10:17199255-17230968 Sample_02_0008 Kidney 786-O_empty_vector 147 10 939 121 5 112 697 VIM,TRDMT1
SE_02_017500119 chr10:17199264-17239397 Sample_02_0175 Lung IMR-90_Etoposide 119 14 1164 134 6 170 989 VIM,TRDMT1
SE_02_153600367 chr10:17199273-17218965 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 367 8 580 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_014000512 chr10:17199279-17232678 Sample_02_0140 Kidney RT242 512 4 978 124 5 127 697 VIM,TRDMT1
SE_02_082400052 chr10:17199283-17219104 Sample_02_0824 Stomach LMSU 52 5 582 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_049800530 chr10:17199285-17219672 Sample_02_0498 Fetal lung IMR90 Senescent_1 530 8 593 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_084900161 chr10:17199287-17218995 Sample_02_0849 iPSCs iPSC_CBP-30 161 6 581 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_136400200 chr10:17199308-17219012 Sample_02_1364 Pancreas pancreatic tumor_associated fibroblasts_triptolide_18h 200 9 579 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_058800581 chr10:17199310-17221006 Sample_02_0588 Cervix HeLa Kyoto_untreated 581 8 640 103 5 54 245 VIM-AS1,TRDMT1,VIM
SE_02_084800078 chr10:17199313-17218992 Sample_02_0848 iPSCs iPSC_DMSO 78 8 579 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_153500324 chr10:17199314-17217829 Sample_02_1535 Mammary gland MDA-MB-231_ER?WT_45min 324 6 544 96 4 51 245 VIM-AS1,TRDMT1,VIM
SE_01_007900904 chr10:17199332-17234965 Sample_01_0079 Peyers patch Peyers-patch 904 5 1043 126 5 152 813 VIM,TRDMT1
SE_02_153700667 chr10:17199334-17218697 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 667 6 569 101 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_114900477 chr10:17199339-17219012 Sample_02_1149 Kidney WT 9-12_control_Nrf2_SFN 477 6 579 102 5 52 245 VIM-AS1,TRDMT1,VIM
SE_02_000900303 chr10:17199349-17230883 Sample_02_0009 Kidney 786-O_wtVHL 303 8 935 121 5 112 697 VIM,TRDMT1
SE_02_131800315 chr10:17199351-17217594 Sample_02_1318 Brain hMGLs_SORL1-A528T 315 8 534 93 4 51 245 VIM-AS1,TRDMT1,VIM
SE_02_112900909 chr10:17199353-17217225 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 909 4 520 92 4 51 245 VIM-AS1,TRDMT1,VIM
SE_02_062200606 chr10:17199375-17221371 Sample_02_0622 Blood EOL1_Naive 606 10 647 105 5 54 245 VIM-AS1,TRDMT1,VIM
SE_02_022900053 chr10:17199394-17231205 Sample_02_0229 Umbilical cord ID01 53 11 939 121 5 115 697 VIM,TRDMT1
SE_02_046900131 chr10:17199401-17216970 Sample_02_0469 Kidney 786-O PBRM1 shRNA#2 131 10 512 91 4 51 245 VIM-AS1,TRDMT1,VIM
SE_02_131400358 chr10:17199480-17217664 Sample_02_1314 Brain hMGLs_TREM2-KO 358 7 535 94 4 51 245 VIM-AS1,TRDMT1,VIM
SE_02_023000047 chr10:17199488-17230621 Sample_02_0230 Umbilical cord ID60 47 9 922 121 5 108 661 VIM,TRDMT1
SE_02_082600966 chr10:17199502-17223971 Sample_02_0826 Stomach gastric tumor 966 12 721 110 5 56 245 VIM-AS1,TRDMT1,VIM
SE_01_002400185 chr10:17199568-17232981 Sample_01_0024 Blood CD14-positive-monocyte 185 3 976 124 5 128 697 VIM,TRDMT1
SE_02_033700248 chr10:17199630-17231353 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 248 4 940 122 5 115 697 VIM,TRDMT1
SE_02_048700206 chr10:17199678-17202219 Sample_02_0487 Bone marrow HSCe_71y_CD34+,CD38-,Lineage- 206 1 83 16 2 7 155 TRDMT1,VIM,VIM-AS1
SE_01_008201187 chr10:17199679-17234910 Sample_01_0082 Right lobe of liver right-lobe-of-liver 1187 5 1031 126 5 152 811 VIM,TRDMT1
SE_02_022100449 chr10:17199698-17231589 Sample_02_0221 Blood CCRF-CEM 449 4 944 122 5 126 697 VIM,TRDMT1
SE_02_048400256 chr10:17199714-17202003 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 256 1 71 12 0 7 134 TRDMT1,VIM,VIM-AS1
SE_02_131700422 chr10:17199828-17217520 Sample_02_1317 Brain hMGLs_SORL1-KO 422 9 517 90 3 51 245 VIM-AS1,TRDMT1,VIM
SE_02_071200665 chr10:17199828-17220797 Sample_02_0712 Pancreas BxPC3_sgNEG 665 5 617 101 4 53 245 VIM-AS1,TRDMT1,VIM
SE_02_034300562 chr10:17199852-17230933 Sample_02_0343 Bone marrow HSPC_A0 562 4 921 119 4 112 697 VIM,TRDMT1
SE_02_034200446 chr10:17199865-17231504 Sample_02_0342 Liver HSPCs_F0 446 6 935 120 4 116 697 VIM,TRDMT1
SE_02_023100489 chr10:17199877-17230973 Sample_02_0231 Tonsil ILC1 489 6 921 119 4 112 697 VIM,TRDMT1
SE_02_048900164 chr10:17199889-17202258 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 164 1 77 16 1 7 159 TRDMT1,VIM,VIM-AS1
SE_02_048200165 chr10:17199895-17202089 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 165 1 70 13 1 7 137 TRDMT1,VIM,VIM-AS1
SE_02_131200407 chr10:17199921-17217573 Sample_02_1312 Brain hMGLs_WT 407 9 518 91 3 51 245 VIM-AS1,TRDMT1,VIM
SE_02_048500139 chr10:17199947-17202185 Sample_02_0485 Bone marrow HSCe_65y_CD34+,CD38-,Lineage- 139 1 74 14 1 7 151 TRDMT1,VIM,VIM-AS1
SE_02_048300194 chr10:17199981-17202246 Sample_02_0483 Bone marrow HSCe_22y_CD34+,CD38-,Lineage- 194 1 74 14 1 7 158 TRDMT1,VIM,VIM-AS1
SE_02_151400787 chr10:17199984-17220836 Sample_02_1514 Lung Differentiated AT1-like cells 787 5 616 101 4 54 245 VIM-AS1,TRDMT1,VIM
SE_02_014800112 chr10:17199993-17231726 Sample_02_0148 Blood CD8_T_cells 112 5 938 120 4 127 697 VIM,TRDMT1
SE_02_136600706 chr10:17200001-17220749 Sample_02_1366 Pancreas BxPC3-untreated 706 4 614 101 4 52 245 VIM-AS1,TRDMT1,VIM
SE_02_049000056 chr10:17200013-17202004 Sample_02_0490 Bone marrow HSCe_68y_CD34+,CD38-,Lineage- 56 1 64 11 0 7 134 TRDMT1,VIM,VIM-AS1
SE_02_021900061 chr10:17200040-17217303 Sample_02_0219 Mammary gland MDA-MB-231 61 4 504 89 3 51 245 TRDMT1,VIM
Genomic distribution of SEs associated with TRDMT1
Genome Browser

The strength of the tissue affected by the gene

Expression of TRDMT1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)