Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_013800121 chr1:112756500-112765657 9157 121 1 239 14 0 0 0 FAM19A3,RHOC,PPM1J
SE_02_013800004 chr1:120007820-120071047 63227 4 6 1084 59 0 342 284 NOTCH2
SE_02_013800036 chr1:120286658-120306383 19725 36 2 0 6 0 31 0 NBPF9,LOC653513
SE_02_013800005 chr1:146167713-146230297 62584 5 6 147 12 0 342 300 NOTCH2NL,NBPF10
SE_02_013800035 chr1:148897147-148918269 21122 35 2 64 11 0 32 0 PDE4DIP
SE_02_013800241 chr1:148941212-148958002 16790 241 2 117 22 1 73 292 PDE4DIP
SE_02_013800129 chr1:150255149-150260810 5661 129 1 140 4 0 72 203 CA14,ANP32E,MRPS21,C1ORF51,APH1A,C1ORF54
SE_02_013800041 chr1:150558916-150580758 21842 41 2 600 57 4 104 1196 MCL1,ADAMTSL4,MIR4257,ENSA
SE_02_013800270 chr1:156740258-156753152 12894 270 1 339 22 1 128 1206 MRPL24,HDGF,C1ORF66,PRCC,ISG20L2,CRABP2
SE_02_013800303 chr1:15833615-15850866 17251 303 2 490 56 4 75 732 SPEN,FLJ37453,UQCRHL
SE_02_013800206 chr1:161528435-161535254 6819 206 1 246 16 0 0 142 FCGR2A,FCGR2C,FCGR3A,HSPA6
SE_02_013800162 chr1:166943040-166953505 10465 162 1 205 10 0 56 0 ILDR2,MAEL
SE_02_013800037 chr1:192510075-192555003 44928 37 7 1111 41 4 87 0 RGS1,RGS13
SE_02_013800153 chr1:205299779-205322268 22489 153 3 613 49 1 202 1233 NUAK2,KLHDC8A
SE_02_013800310 chr1:222810858-222826966 16108 310 4 363 41 0 36 135 FAM177B
SE_02_013800136 chr1:222963928-222974276 10348 136 2 236 23 0 11 0 DISP1
SE_02_013800220 chr1:234598952-234614600 15648 220 3 424 24 2 0 780 IRF2BP2,NCRNA00184
SE_02_013800018 chr1:23544948-23578601 33653 18 4 975 51 1 209 382 ID3,E2F2,MDS2
SE_02_013800079 chr1:244832709-244851305 18596 79 1 488 29 2 42 796 HNRNPU,FAM36A,NCRNA00201
SE_02_013800178 chr1:244852219-244866824 14605 178 1 393 15 0 221 1002 HNRNPU,FAM36A,NCRNA00201
SE_02_013800306 chr1:244962416-244972460 10044 306 2 315 30 1 9 254 EFCAB2
SE_02_013800254 chr1:26408909-26432861 23952 254 3 562 39 4 245 1035 DHDDS,LIN28A,ZNF683,HMGN2
SE_02_013800251 chr1:26602247-26622511 20264 251 2 427 25 1 0 0 MIR1976,RPS6KA1
SE_02_013800161 chr1:26677257-26698187 20930 161 3 417 29 1 304 600 ARID1A
SE_02_013800085 chr1:33323663-33349767 26104 85 5 696 68 0 173 1051 PHC2,MIR3605
SE_02_013800058 chr1:39127501-39196143 68642 58 12 1624 100 2 235 95 MACF1
SE_02_013800093 chr1:61049078-61058472 9394 93 1 212 0 0 35 0 NFIA
SE_02_013800032 chr1:61075852-61102566 26714 32 3 594 6 2 337 469 NFIA
SE_02_013800017 chr1:61426099-61464287 38188 17 4 913 9 3 491 789 NFIA,TM2D1
SE_02_013800238 chr1:61500257-61514948 14691 238 2 383 0 3 10 0 TM2D1
SE_02_013800171 chr1:62719807-62733098 13291 171 3 311 29 1 0 0 DOCK7
SE_02_013800104 chr1:8699625-8729107 29482 104 3 737 23 1 53 0 RERE
SE_02_013800267 chr10:101041934-101068178 26244 267 4 645 29 0 141 1230 KAZALD1,LZTS2,PDZD7,SFXN3
SE_02_013800282 chr10:120096184-120117751 21567 282 2 636 30 4 37 0 SEC23IP
SE_02_013800170 chr10:121672764-121712197 39433 170 5 1203 62 6 107 0 FGFR2
SE_02_013800069 chr10:121764588-121804629 40041 69 3 1059 56 2 103 46 ATE1
SE_02_013800135 chr10:16843565-16869888 26323 135 5 765 11 2 21 108 CUBN,RSU1
SE_02_013800050 chr10:16942315-16989461 47146 50 5 1523 178 29 35 382 CUBN,RSU1
SE_02_013800031 chr10:17195498-17240346 44848 31 4 1292 154 6 170 989 VIM,TRDMT1
SE_02_013800148 chr10:21517063-21529534 12471 148 2 226 4 0 342 577 C10ORF140,MLLT10,MIR1915,C10ORF114
SE_02_013800227 chr10:24342492-24359965 17473 227 3 489 2 2 24 0 KIAA1217,MIR603
SE_02_013800191 chr10:3773918-3787258 13340 191 1 412 8 2 218 1028 KLF6
SE_02_013800061 chr10:4660086-4675199 15113 61 2 424 11 1 24 148 LOC338588,LOC100216001
SE_02_013800247 chr10:68327222-68334735 7513 247 1 188 16 0 35 240 HNRNPH3,PBLD
SE_02_013800091 chr10:71833632-71861724 28092 91 2 853 79 4 14 267 PSAP,CDH23
SE_02_013800095 chr10:75395044-75410219 15175 95 1 436 16 0 308 1530 NCRNA00245,ZNF503
SE_02_013800182 chr10:89276366-89285407 9041 182 2 194 12 0 5 115 LIPA,IFIT2,IFIT3
SE_02_013800149 chr10:91031395-91052820 21425 149 2 631 36 1 91 146 NUDT9P1
SE_02_013800066 chr10:91878725-91911266 32541 66 5 812 103 3 57 489 FGFBP3,BTAF1
SE_02_013800034 chr10:93433751-93469541 35790 34 7 1026 123 3 91 83 MYOF,CEP55
SE_02_013800307 chr11:102108509-102121110 12601 307 2 365 26 1 76 586 YAP1
SE_02_013800286 chr11:103681112-103703033 21921 286 2 567 63 0 17 0 DDI1
SE_02_013800300 chr11:111964154-111985584 21430 300 2 469 25 0 137 763 DIXDC1,C11ORF52,DLAT
SE_02_013800265 chr11:115406011-115412212 6201 265 1 130 3 0 64 0 CADM1
SE_02_013800083 chr11:121651968-121673691 21723 83 2 559 15 1 172 0 SORL1,SC5DL
SE_02_013800056 chr11:122091695-122106634 14939 56 1 376 12 1 222 483 MIR125B1,LOC399959,MIR100,MIRLET7A2,BLID
SE_02_013800290 chr11:125369656-125384519 14863 290 2 491 10 1 132 0 PKNOX2,FEZ1
SE_02_013800281 chr11:12861589-12866870 5281 281 1 125 4 0 65 143 TEAD1,RASSF10
SE_02_013800213 chr11:46045587-46057439 11852 213 2 252 14 0 67 0 PHF21A
SE_02_013800062 chr11:57760727-57782602 21875 62 2 467 33 0 159 92 CTNND1,C11ORF31,MED19,TMX2,BTBD18
SE_02_013800297 chr11:65417116-65431691 14575 297 2 416 17 2 36 1177 NEAT1,FRMD8,SLC25A45,MIR612
SE_02_013800019 chr11:65475991-65508714 32723 19 4 961 88 4 44 963 MALAT1,MIR612,SCYL1,LTBP3
SE_02_013800086 chr11:68097028-68129388 32360 86 5 798 38 3 62 311 CHKA
SE_02_013800020 chr11:69636181-69670896 34715 20 3 1141 41 2 161 1957 ORAOV1,CCND1,FGF19
SE_02_013800199 chr11:78348272-78367229 18957 199 4 510 49 0 75 0 GAB2
SE_02_013800250 chr11:82718224-82758754 40530 250 6 1135 67 6 162 515 FAM181B
SE_02_013800252 chr11:96304913-96315056 10143 252 2 265 20 1 51 0 MAML2,MIR1260B
SE_02_013800092 chr12:124913567-124941177 27610 92 4 990 29 4 20 809 UBC,SCARB1,DHX37
SE_02_013800138 chr12:12713710-12737375 23665 138 2 621 55 2 185 598 APOLD1,CDKN1B,MIR613,GPR19
SE_02_013800132 chr12:13097251-13132127 34876 132 3 829 51 1 98 88 GSG1
SE_02_013800274 chr12:14256226-14262501 6275 274 1 180 9 3 21 0 ATF7IP
SE_02_013800230 chr12:19408327-19413837 5510 230 1 162 2 0 11 0 AEBP2
SE_02_013800046 chr12:31361632-31393911 32279 46 6 867 79 2 0 954 DENND5B,FLJ13224,FAM60A
SE_02_013800202 chr12:32449954-32462040 12086 202 3 255 35 0 0 0 FGD4
SE_02_013800057 chr12:49186116-49217555 31439 57 3 739 53 1 114 382 TUBA1A,TUBA1C
SE_02_013800101 chr12:54255082-54263889 8807 101 1 189 7 0 80 189 CBX5,HNRNPA1P10,NFE2,HNRNPA1
SE_02_013800012 chr12:54327867-54369406 41539 12 6 982 46 3 318 1191 ZNF385A,MIR148B,GPR84,COPZ1,CBX5,HNRNPA1P10,HNRNPA1,NFE2,ITGA5
SE_02_013800231 chr12:57084373-57096139 11766 231 1 307 25 3 228 1203 STAT6,NAB2,MYO1A,LRP1,TMEM194A
SE_02_013800184 chr12:65871141-65900875 29734 184 7 708 18 3 145 261 HMGA2,RPSAP52
SE_02_013800087 chr12:65924801-65964965 40164 87 7 938 30 10 206 802 HMGA2,RPSAP52
SE_02_013800167 chr12:66057988-66068095 10107 167 1 263 26 0 79 55 LLPH
SE_02_013800052 chr12:6916030-6945800 29770 52 5 887 64 2 364 3289 ENO2,ATN1,C12ORF57,RPL13P5,PTPN6,PHB2,TPI1,DSTNP2,SPSB2,EMG1,LRRC23,MIR141,MIR200C,SCARNA12
SE_02_013800098 chr12:89343582-89357628 14046 98 2 418 38 0 190 485 DUSP6
SE_02_013800263 chr12:94424221-94436763 12542 263 2 319 18 0 33 40 CCDC41,LOC144486
SE_02_013800257 chr12:97061229-97077835 16606 257 2 442 12 1 62 0 NEDD1
SE_02_013800302 chr12:97259467-97278436 18969 302 2 471 0 2 115 0 RMST
SE_02_013800137 chr12:97384075-97406083 22008 137 3 632 0 2 82 0 RMST
SE_02_013800003 chr12:97454978-97563128 108150 3 14 2713 39 10 693 728 MIR1251,RMST,MIR135A2
SE_02_013800196 chr13:112056161-112075068 18907 196 2 475 0 0 269 765 SOX1
SE_02_013800190 chr13:23559086-23582467 23381 190 3 603 32 1 82 241 TNFRSF19
SE_02_013800076 chr13:39383513-39421176 37663 76 4 1027 106 6 141 0 LHFP
SE_02_013800186 chr13:44901986-44919521 17535 186 2 523 17 1 14 78 NUFIP1
SE_02_013800107 chr13:80334138-80343810 9672 107 1 224 4 0 163 577 SPRY2
SE_02_013800158 chr13:99656053-99665290 9237 158 1 217 17 2 76 0 CLYBL,MIR4306
SE_02_013800009 chr13:99852796-99877763 24967 9 1 628 25 3 239 280 CLYBL,ZIC5
SE_02_013800002 chr13:99949296-99997873 48577 2 3 1200 16 5 901 1645 ZIC2,ZIC5
SE_02_013800217 chr14:23914739-23931748 17009 217 2 462 51 1 16 58 C14ORF165,C14ORF167,DHRS4,DHRS4L2
SE_02_013800183 chr14:53943420-53957947 14527 183 1 344 23 6 241 801 BMP4
SE_02_013800272 chr14:54337568-54367947 30379 272 4 886 59 0 62 0 CDKN3,CNIH
SE_02_013800014 chr14:56795549-56822334 26785 14 1 635 6 0 345 801 OTX2,OTX2OS1
SE_02_013800042 chr14:56847090-56903343 56253 42 8 1477 15 3 336 77 OTX2OS1,OTX2
SE_02_013800021 chr14:57057328-57088588 31260 21 1 751 18 3 272 0 MUDENG
SE_02_013800143 chr14:67932915-67945779 12864 143 2 300 9 1 78 0 RAD51L1
SE_02_013800102 chr14:68087019-68114854 27835 102 4 695 39 0 123 0 RAD51L1
SE_02_013800073 chr14:68785429-68797750 12321 73 1 383 7 6 224 1034 C14ORF181,ZFP36L1
SE_02_013800298 chr14:75293187-75316155 22968 298 3 685 52 2 63 267 FOS
SE_02_013800044 chr14:77021777-77059906 38129 44 4 1061 74 12 506 1041 C14ORF4,KIAA1737
SE_02_013800309 chr14:78983844-78989104 5260 309 1 136 2 0 34 56 NRXN3
SE_02_013800193 chr15:41773006-41800538 27532 193 5 676 45 5 106 281 MAPKBP1,JMJD7,PLA2G4B
SE_02_013800246 chr15:63231144-63258039 26895 246 6 657 63 2 56 176 RAB8B,APH1B
SE_02_013800118 chr15:70697854-70716778 18924 118 2 433 19 1 42 91 UACA
SE_02_013800025 chr15:92801723-92834429 32706 25 4 995 21 0 46 0 LOC100507217,ASB9P1
SE_02_013800164 chr15:92879529-92889062 9533 164 1 259 5 1 79 343 LOC100507217,MIR3175,CHD2
SE_02_013800159 chr15:93043868-93090627 46759 159 6 1672 36 2 270 1540 RGMA
SE_02_013800276 chr15:96325177-96356056 30879 276 5 700 3 0 784 1301 NR2F2,MIR1469
SE_02_013800268 chr16:53030520-53053842 23322 268 3 616 20 4 21 0 CHD9
SE_02_013800147 chr16:69395477-69418869 23392 147 3 570 50 0 77 0 TMED6,CYB5B,TERF2
SE_02_013800292 chr16:79579909-79602591 22682 292 2 818 17 2 265 882 MAF
SE_02_013800026 chr17:17903053-17972981 69928 26 11 1689 183 3 223 279 LRRC48,TOM1L2
SE_02_013800222 chr17:37818635-37837370 18735 222 2 558 62 5 53 0 LOC284100
SE_02_013800279 chr17:46717586-46744733 27147 279 4 525 47 14 99 41 NSF,WNT3
SE_02_013800317 chr17:57255166-57292690 37524 317 4 1024 18 7 320 1220 MSI2
SE_02_013800259 chr17:57892014-57955263 63249 259 8 1656 87 3 258 221 CUEDC1,MRPS23,VEZF1
SE_02_013800106 chr17:59750805-59764994 14189 106 3 300 35 2 28 6 TMEM49,PTRH2
SE_02_013800063 chr17:59778963-59788987 10024 63 2 186 20 0 37 0 TMEM49,MIR21
SE_02_013800047 chr17:59825486-59848319 22833 47 3 496 40 0 109 260 MIR21,TMEM49,RPS6KB1,TUBD1
SE_02_013800210 chr17:61493114-61499445 6331 210 1 158 3 0 67 0 TBX4
SE_02_013800155 chr17:65514185-65566529 52344 155 11 1535 54 2 422 1652 AXIN2
SE_02_013800048 chr17:669622-694343 24721 48 4 742 78 2 36 52 VPS53,FAM57A
SE_02_013800266 chr17:75008531-75035821 27290 266 4 853 97 1 37 878 ICT1,C17ORF28,CDR2L,KCTD2,ATP5H
SE_02_013800152 chr17:75672342-75695704 23362 152 4 622 32 3 26 294 SAP30BP,RECQL5,LOC643008,LOC100130933,ITGB4
SE_02_013800239 chr17:77449550-77475291 25741 239 3 818 13 0 62 561 SEPT9,9-SEP
SE_02_013800316 chr17:7833839-7845536 11697 316 2 296 15 1 312 296 KDM6B,LSMD1,CYB5D1,CHD3,TMEM88
SE_02_013800256 chr17:924690-955457 30767 256 6 1190 92 6 87 0 NXN,TIMM22
SE_02_013800133 chr18:22165902-22196153 30251 133 6 710 3 0 247 1252 GATA6
SE_02_013800232 chr18:26319647-26338164 18517 232 3 471 35 0 121 132 TAF4B,KCTD1
SE_02_013800200 chr18:27920264-27924547 4283 200 1 92 2 3 23 0 CDH2
SE_02_013800116 chr18:28032452-28050141 17689 116 5 419 16 1 72 61 CDH2
SE_02_013800197 chr18:3073090-3089175 16085 197 2 443 38 3 43 253 MYOM1,LPIN2
SE_02_013800022 chr18:3445541-3468038 22497 22 3 625 22 3 215 979 TGIF1
SE_02_013800016 chr18:3591485-3626290 34805 16 7 905 52 5 81 771 FLJ35776,DLGAP1
SE_02_013800261 chr18:3662973-3672181 9208 261 2 256 7 3 14 0 DLGAP1,FLJ35776
SE_02_013800208 chr18:63967857-63975177 7320 208 2 205 26 1 8 106 SERPINB8,HMSD
SE_02_013800039 chr18:70176120-70258225 82105 39 10 2302 43 3 185 487 RTTN,SOCS6
SE_02_013800255 chr18:70287770-70313876 26106 255 4 753 46 2 30 194 SOCS6
SE_02_013800242 chr19:49807578-49821331 13753 242 3 427 34 1 75 1264 FUZ,MED25,AP2A1,TSKS,PNKP,PTOV1
SE_02_013800187 chr19:56965543-56976361 10818 187 1 359 21 0 8 0 MIMT1
SE_02_013800134 chr2:104042438-104054311 11873 134 2 280 4 1 117 0 LOC150568
SE_02_013800029 chr2:104841508-104874075 32567 29 1 671 32 2 420 1260 POU3F3
SE_02_013800139 chr2:110051905-110072328 20423 139 2 97 5 0 0 89 MIR4267,MALL,NPHP1
SE_02_013800140 chr2:110299025-110319560 20535 140 2 95 7 0 0 0 LOC100507334,LOC151009
SE_02_013800219 chr2:174770480-174798736 28256 219 3 784 37 2 87 215 CHRNA1
SE_02_013800145 chr2:174958751-174985772 27021 145 4 721 29 1 43 0 CHN1
SE_02_013800264 chr2:177621470-177636222 14752 264 2 417 74 3 92 642 PDE11A,TTC30A
SE_02_013800028 chr2:182816212-182869102 52890 28 7 1324 115 2 197 494 FRZB
SE_02_013800055 chr2:187526661-187578982 52321 55 4 1413 122 0 6 50 TFPI
SE_02_013800245 chr2:201115286-201127970 12684 245 3 267 21 1 21 289 CFLAR,FAM126B,NDUFB3
SE_02_013800156 chr2:204250369-204284224 33855 156 5 1026 2 4 299 0 PARD3B
SE_02_013800269 chr2:209365851-209371071 5220 269 1 134 15 3 2 0 MAP2
SE_02_013800089 chr2:42905154-42929903 24749 89 3 835 91 4 95 0 HAAO
SE_02_013800075 chr2:43217841-43231873 14032 75 1 444 20 0 213 1307 THADA,LOC100129726,ZFP36L2
SE_02_013800224 chr2:43341375-43348816 7441 224 1 221 9 0 27 162 THADA,LOC100129726
SE_02_013800065 chr2:67844612-67900425 55813 65 10 1738 4 5 336 0 C1D
SE_02_013800201 chr2:67971135-67978452 7317 201 2 190 4 1 8 0 C1D
SE_02_013800215 chr2:70084873-70090879 6006 215 1 185 14 0 131 686 LOC400960,PCBP1,LOC100133985
SE_02_013800179 chr2:70104322-70126290 21968 179 4 566 43 0 3 273 LOC100133985,PCBP1,LOC400960
SE_02_013800067 chr2:8675198-8686636 11438 67 1 378 10 0 257 321 ID2
SE_02_013800291 chr2:99569014-99575823 6809 291 1 168 13 0 36 4 AFF3,REV1
SE_02_013800271 chr20:31603663-31609991 6328 271 1 274 22 3 116 400 ID1,MIR3193,COX4I2
SE_02_013800289 chr20:31711351-31724237 12886 289 3 260 16 1 136 385 BCL2L1,TPX2
SE_02_013800226 chr20:47315138-47330071 14933 226 3 413 2 0 29 420 ZMYND8,LOC100131496
SE_02_013800015 chr20:47346655-47363517 16862 15 1 425 4 4 142 808 ZMYND8,LOC100131496
SE_02_013800180 chr20:51687288-51716992 29704 180 5 922 85 0 0 419 ATP9A
SE_02_013800173 chr20:51795633-51805328 9695 173 1 241 30 2 0 136 SALL4,ATP9A
SE_02_013800305 chr20:51908698-51913768 5070 305 1 145 2 0 0 0 SALL4
SE_02_013800283 chr20:53578705-53599155 20450 283 3 487 5 1 126 449 ZNF217
SE_02_013800181 chr20:53897045-53921668 24623 181 3 712 10 1 33 0 SUMO1P1
SE_02_013800024 chr21:16068685-16089191 20506 24 2 557 1 5 138 125 C21ORF34
SE_02_013800023 chr21:16168068-16217218 49150 23 6 1423 4 2 118 68 C21ORF34
SE_02_013800081 chr21:16277620-16311397 33777 81 4 941 5 3 214 19 C21ORF34
SE_02_013800097 chr21:32794960-32814859 19899 97 2 495 36 1 19 343 C21ORF49,C21ORF62,GCFC1
SE_02_013800188 chr21:34364171-34386126 21955 188 3 620 7 0 35 366 FAM165B,KCNE2
SE_02_013800011 chr21:36698462-36769177 70715 11 10 2191 43 12 254 2496 SIM2,HLCS
SE_02_013800198 chr21:36802559-36821333 18774 198 3 578 36 1 91 0 HLCS,SIM2
SE_02_013800165 chr21:43146202-43178032 31830 165 3 1104 5 4 0 544 CRYAA,U2AF1
SE_02_013800248 chr21:46597331-46606300 8969 248 1 260 65 2 14 417 S100B,PRMT2
SE_02_013800296 chr22:23519452-23539993 20541 296 2 865 106 2 0 0 IGLL1
SE_02_013800214 chr22:46063923-46088955 25032 214 4 753 24 1 182 131 LOC400931,C22ORF26,MIRLET7A3,MIR3619,LOC100271722,LOC150381,MIRLET7B
SE_02_013800109 chr3:112296926-112335274 38348 109 5 970 104 2 12 417 CD200,SLC9A10
SE_02_013800125 chr3:120415795-120439779 23984 125 4 644 80 3 77 52 FSTL1,MIR198
SE_02_013800240 chr3:139530976-139540765 9789 240 1 240 24 0 39 346 RBP1
SE_02_013800001 chr3:147353608-147426836 73228 1 4 1874 60 4 919 2256 ZIC4,ZIC1
SE_02_013800273 chr3:149369741-149379897 10156 273 3 270 23 2 46 384 TM4SF1,TM4SF18
SE_02_013800194 chr3:155735919-155749765 13846 194 4 319 23 0 74 0 PLCH1
SE_02_013800112 chr3:174437287-174444309 7022 112 1 162 1 0 17 140 NAALADL2
SE_02_013800195 chr3:177190897-177200618 9721 195 2 309 16 0 31 287 TBL1XR1
SE_02_013800288 chr3:177342639-177361437 18798 288 2 508 12 0 93 0 TBL1XR1
SE_02_013800049 chr3:181709256-181730420 21164 49 1 457 0 0 423 517 SOX2,SOX2OT
SE_02_013800253 chr3:187737560-187748751 11191 253 1 611 13 3 190 103 BCL6,RTP2,LOC100131635
SE_02_013800150 chr3:190994055-191023074 29019 150 3 882 17 2 75 0 SNAR-I,GEMC1
SE_02_013800235 chr3:31960011-31974460 14449 235 3 397 20 0 20 0 OSBPL10,ZNF860
SE_02_013800312 chr3:45043803-45062385 18582 312 3 508 42 0 7 0 CLEC3B
SE_02_013800008 chr3:57098698-57165482 66784 8 10 1765 147 8 328 770 IL17RD,SPATA12,ARHGEF3,HESX1
SE_02_013800151 chr3:58560548-58587044 26496 151 3 741 71 5 57 1007 FAM107A,ACOX2
SE_02_013800174 chr3:59752519-59777884 25365 174 3 859 4 9 100 0 FHIT,C3ORF67
SE_02_013800110 chr3:59799211-59820825 21614 110 3 609 12 4 118 0 FHIT,C3ORF67
SE_02_013800228 chr3:64341708-64356625 14917 228 2 438 8 2 60 0 PRICKLE2
SE_02_013800030 chr3:69854733-69891949 37216 30 3 861 15 0 178 172 MITF
SE_02_013800124 chr4:123302878-123353973 51095 124 5 1425 128 1 94 540 SPATA5,SPRY1
SE_02_013800053 chr4:123395665-123420207 24542 53 3 613 8 1 101 737 SPRY1
SE_02_013800013 chr4:138176141-138244269 68128 13 9 1735 96 6 388 708 SLC7A11
SE_02_013800275 chr4:142401841-142408980 7139 275 1 145 12 0 41 100 INPP4B
SE_02_013800203 chr4:144351961-144359093 7132 203 1 178 2 6 107 0 GYPA,HHIP
SE_02_013800010 chr4:168534887-168586308 51421 10 4 1376 81 5 0 0 PALLD
SE_02_013800082 chr4:168629379-168641941 12562 82 2 331 7 1 96 129 PALLD
SE_02_013800229 chr4:169656870-169666685 9815 229 2 216 19 0 44 127 CLCN3,NEK1
SE_02_013800176 chr4:175808890-175836245 27355 176 4 691 25 3 112 157 GPM6A
SE_02_013800260 chr4:182535847-182561289 25442 260 4 714 36 1 98 62 ODZ3,DCTD
SE_02_013800108 chr4:185302168-185312002 9834 108 1 268 19 2 8 64 SNX25,LRP2BP
SE_02_013800027 chr4:20422224-20448508 26284 27 3 744 24 2 79 0 SLIT2,MIR218-1
SE_02_013800192 chr4:20463835-20489807 25972 192 6 752 2 0 119 132 SLIT2,MIR218-1
SE_02_013800185 chr4:20504578-20545352 40774 185 6 1222 9 11 179 449 MIR218-1,SLIT2
SE_02_013800205 chr4:26296290-26303197 6907 205 1 154 5 0 32 0 RBPJ
SE_02_013800115 chr4:57061898-57113079 51181 115 11 1384 196 5 162 259 LOC255130,IGFBP7
SE_02_013800177 chr4:72309910-72322264 12354 177 2 334 1 0 66 350 ADAMTS3
SE_02_013800078 chr4:76432397-76461845 29448 78 3 717 79 10 52 136 SHROOM3,CCDC158
SE_02_013800127 chr4:8430709-8443775 13066 127 1 391 39 0 11 296 ACOX3,C4ORF23
SE_02_013800234 chr4:87031810-87080569 48759 234 6 1374 128 19 93 259 AFF1
SE_02_013800189 chr4:87516327-87532295 15968 189 3 448 85 0 61 78 SPARCL1
SE_02_013800243 chr4:99718426-99725504 7078 243 1 154 11 0 40 0 DAPP1
SE_02_013800166 chr5:124740680-124750302 9622 166 1 208 0 0 202 346 ZNF608
SE_02_013800262 chr5:125408315-125414469 6154 262 1 160 1 2 83 0 ZNF608
SE_02_013800111 chr5:141507970-141526473 18503 111 4 451 31 0 189 1055 PCDHGB3,PCDHGC3,PCDHGA2,PCDHGA3,PCDHGA8,PCDHGA11,PCDHGA10,PCDHGA12,PCDHGA4,PCDHGA9,PCDHGB6,PCDHGC5,DIAPH1,PCDHGA5,PCDHGB4,PCDHGB5,PCDHGB7,PCDHGA7,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2
SE_02_013800277 chr5:154273775-154290306 16531 277 2 424 72 5 16 0 GALNT10
SE_02_013800314 chr5:163502094-163507032 4938 314 1 111 9 0 2 205 MAT2B,HMMR,NUDCD2
SE_02_013800033 chr5:16710358-16743727 33369 33 6 967 4 4 71 268 MYO10,FAM134B
SE_02_013800160 chr5:175545643-175567553 21910 160 2 581 5 1 11 0 SFXN1,DRD1
SE_02_013800207 chr5:18340946-18396530 55584 207 6 1602 0 2 60 0 LOC401177
SE_02_013800077 chr5:28152369-28169381 17012 77 3 478 0 0 49 0 LOC729862
SE_02_013800285 chr5:28390488-28408404 17916 285 4 495 0 1 7 0 LOC729862
SE_02_013800233 chr5:58781358-58810691 29333 233 4 753 7 5 45 0 RAB3C,PDE4D
SE_02_013800119 chr5:58884907-58928623 43716 119 7 1091 17 6 94 0 PDE4D
SE_02_013800293 chr5:58995841-59008106 12265 293 3 315 0 3 40 78 PDE4D
SE_02_013800154 chr5:65075120-65082295 7175 154 1 188 17 2 39 0 CWC27
SE_02_013800287 chr5:77084296-77089488 5192 287 1 132 6 0 9 406 ZBED3,LOC728723,SNORA47
SE_02_013800211 chr5:88660250-88680781 20531 211 3 446 13 4 507 778 LOC645323,MIR9-2
SE_02_013800103 chr5:90545328-90571510 26182 103 4 536 42 2 90 130 GPR98,LYSMD3
SE_02_013800126 chr5:90596519-90619742 23223 126 5 600 47 2 41 64 GPR98
SE_02_013800313 chr5:91378448-91385217 6769 313 1 123 8 0 93 339 ARRDC3,LOC100129716
SE_02_013800113 chr5:93575560-93604857 29297 113 3 548 15 1 689 1079 NR2F1,FLJ42709,MIR2277
SE_02_013800141 chr6:11194032-11233744 39712 141 5 1039 116 5 218 314 NEDD9
SE_02_013800284 chr6:113585702-113598017 12315 284 3 318 14 2 60 0 MARCKS
SE_02_013800175 chr6:113853859-113862367 8508 175 1 181 4 0 199 577 MARCKS,FLJ34503
SE_02_013800051 chr6:121429925-121454756 24831 51 3 636 26 4 112 370 GJA1
SE_02_013800237 chr6:121845775-121853837 8062 237 1 201 11 1 17 0 GJA1
SE_02_013800128 chr6:122058749-122070901 12152 128 2 329 39 2 57 0 HSF2
SE_02_013800054 chr6:125187969-125262453 74484 54 12 1941 209 2 98 407 TPD52L1,HDDC2
SE_02_013800099 chr6:138482357-138530371 48014 99 6 1326 38 4 101 109 NHSL1,MIR3145
SE_02_013800094 chr6:139366643-139377279 10636 94 1 338 11 0 247 457 CITED2
SE_02_013800172 chr6:140535949-140543186 7237 172 1 168 1 1 41 0 MIR3668
SE_02_013800045 chr6:143671843-143693865 22022 45 3 567 41 2 98 181 PHACTR2
SE_02_013800123 chr6:143735571-143748397 12826 123 3 359 24 3 29 0 PHACTR2
SE_02_013800114 chr6:143959680-143977432 17752 114 3 420 22 1 92 409 PLAGL1,HYMAI
SE_02_013800100 chr6:147939899-147985227 45328 100 6 1360 118 5 233 0 SASH1
SE_02_013800216 chr6:150658532-150670804 12272 216 2 350 23 1 32 0 PLEKHG1
SE_02_013800225 chr6:150711295-150724695 13400 225 2 377 22 1 49 75 PLEKHG1
SE_02_013800131 chr6:150751003-150778808 27805 131 5 759 27 4 41 41 PLEKHG1,MTHFD1L
SE_02_013800258 chr6:154154638-154166862 12224 258 2 299 4 3 32 572 IPCEF1,OPRM1
SE_02_013800088 chr6:154239986-154249755 9769 88 1 274 5 1 56 110 IPCEF1,OPRM1
SE_02_013800308 chr6:156684181-156689378 5197 308 1 103 0 1 65 0 ARID1B
SE_02_013800105 chr6:163942336-163967981 25645 105 3 719 0 0 94 0 QKI
SE_02_013800130 chr6:164082447-164107482 25035 130 2 745 30 4 71 0 QKI
SE_02_013800244 chr6:166275132-166286711 11579 244 2 447 34 1 5 0 PRR18,SFT2D1
SE_02_013800146 chr6:24908378-24938219 29841 146 3 765 50 2 102 185 FAM65B
SE_02_013800090 chr6:32967572-32973046 5474 90 1 209 33 3 134 818 BRD2,HLA-DMA,HLA-DOA,HLA-DMB
SE_02_013800040 chr6:37100734-37143052 42318 40 4 1171 54 2 142 0 PIM1
SE_02_013800295 chr6:56701703-56726323 24620 295 5 631 45 1 34 43 DST
SE_02_013800120 chr6:71395227-71421742 26515 120 4 679 60 4 181 583 MIR30A,C6ORF155,MIR30C2
SE_02_013800318 chr7:104976029-104987658 11629 318 2 284 18 0 21 685 MLL5,LOC723809,LOC100216545
SE_02_013800236 chr7:105003115-105017416 14301 236 3 420 14 0 101 724 MLL5,LOC100216545
SE_02_013800157 chr7:129367109-129390933 23824 157 3 534 32 2 99 328 AHCYL2,FAM40B
SE_02_013800117 chr7:150363399-150389526 26127 117 4 722 92 2 156 1402 REPIN1,ZNF775,ACTR3C,LOC728743,C7ORF29,LRRC61,RARRES2,LOC285972
SE_02_013800122 chr7:20774473-20798522 24049 122 2 539 3 3 431 766 SP8,RPL23P8
SE_02_013800209 chr7:23230195-23249246 19051 209 2 561 40 3 41 59 GPNMB,NUPL2
SE_02_013800304 chr7:25287425-25319414 31989 304 4 1029 8 1 160 0 NPVF,C7ORF31
SE_02_013800060 chr7:25347430-25393483 46053 60 6 1479 53 1 250 0 NPVF,C7ORF31
SE_02_013800043 chr7:5413085-5439878 26793 43 3 914 14 0 269 846 TNRC18
SE_02_013800071 chr7:74626312-74662593 36281 71 4 810 66 1 44 199 GTF2I
SE_02_013800074 chr7:7680490-7759450 78960 74 10 2328 224 11 213 133 LOC729852,RPA3
SE_02_013800221 chr7:91262306-91281977 19671 221 3 396 21 1 159 803 FZD1
SE_02_013800096 chr7:91682295-91697237 14942 96 2 440 47 0 62 0 MTERF
SE_02_013800301 chr7:91829862-91848925 19063 301 3 431 19 6 84 0 MTERF
SE_02_013800218 chr8:10530067-10538958 8891 218 2 421 56 2 0 358 PRSS55,MIR1322
SE_02_013800299 chr8:126372687-126378512 5825 299 1 154 2 1 21 0 FAM84B
SE_02_013800142 chr8:126578555-126591383 12828 142 2 403 17 1 43 0 FAM84B
SE_02_013800204 chr8:17478937-17500292 21355 204 3 939 25 1 50 169 SLC7A2
SE_02_013800068 chr8:28489369-28500529 11160 68 1 265 26 0 7 227 FBXO16,FZD3,MIR4288
SE_02_013800038 chr8:28502494-28521536 19042 38 1 483 33 5 0 143 MIR4288,FZD3,FBXO16
SE_02_013800070 chr8:37856511-37899899 43388 70 8 1081 23 0 132 2105 RAB11FIP1,BRF2,GOT1L1
SE_02_013800249 chr8:38380467-38412414 31947 249 3 759 39 1 138 1346 LETM2,FGFR1,WHSC1L1
SE_02_013800163 chr8:43237346-43242376 5030 163 1 290 11 0 0 0 POTEA,HGSNAT
SE_02_013800064 chr8:85828594-85864447 35853 64 5 891 31 1 29 0 REXO1L1,PSKH2
SE_02_013800144 chr8:91216355-91251318 34963 144 5 768 50 3 98 115 SLC26A7,LRRC69
SE_02_013800059 chr9:124656346-124678503 22157 59 2 554 4 2 130 257 NR6A1,MIR181A2,MIR181B2
SE_02_013800223 chr9:126331022-126349881 18859 223 4 459 24 4 88 151 FAM125B
SE_02_013800168 chr9:126498938-126533772 34834 168 4 1062 81 6 209 977 FAM125B,LMX1B
SE_02_013800084 chr9:14307964-14323939 15975 84 1 386 1 0 252 191 NFIB
SE_02_013800212 chr9:3523498-3530380 6882 212 1 223 8 0 112 136 RFX3
SE_02_013800294 chr9:3730961-3761384 30423 294 4 1180 16 6 0 0 C9ORF70
SE_02_013800007 chr9:3892611-3995219 102608 7 15 3677 111 22 614 391 GLIS3,C9ORF70
SE_02_013800080 chr9:6910023-6957694 47671 80 5 1868 100 10 0 69 KDM4C
SE_02_013800311 chr9:70404546-70421902 17356 311 4 406 19 0 294 385 KLF9
SE_02_013800280 chr9:70550751-70574909 24158 280 3 670 49 2 114 112 TRPM3,KLF9
SE_02_013800006 chr9:70769525-70903139 133614 6 25 3745 278 12 383 892 MIR204,TRPM3
SE_02_013800278 chr9:76691406-76716683 25277 278 3 820 102 7 150 1079 PRUNE2,PCA3
SE_02_013800315 chr9:78435932-78442209 6277 315 1 174 5 0 95 0 PSAT1
SE_02_013800169 chrX:137550441-137577808 27367 169 2 466 10 0 449 723 ZIC3

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM1835835
Input ID: Name:GSM1835862
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb