| SE_02_059400023 |
chr17:57255665-57558522 |
Sample_02_0594 |
iPSC-derived |
neural progenitors |
23 |
61 |
8373 |
222 | 39 | 1915 |
1316 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_110500007 |
chr17:57259135-57678948 |
Sample_02_1105 |
Brain |
NBL-S |
7 |
192 |
11794 |
361 | 45 | 2647 |
1575 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_110000007 |
chr17:57309741-57708874 |
Sample_02_1100 |
Brain |
COG-N-415 |
7 |
184 |
11125 |
365 | 40 | 2514 |
931 |
LOC101927557,MSI2,LOC101927539,CCDC182 |
| SE_02_110900001 |
chr17:57323292-57675536 |
Sample_02_1109 |
Brain |
SK-N-FI |
1 |
100 |
9914 |
331 | 36 | 2219 |
788 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_110300003 |
chr17:57337451-57708885 |
Sample_02_1103 |
Brain |
NB-1643 |
3 |
172 |
10368 |
346 | 37 | 2383 |
931 |
LOC101927557,MSI2,LOC101927539,CCDC182 |
| SE_02_110600010 |
chr17:57338482-57683142 |
Sample_02_1106 |
Brain |
NGP |
10 |
206 |
9694 |
324 | 35 | 2306 |
931 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_103400009 |
chr17:57354408-57580677 |
Sample_02_1034 |
Blood |
AML cell |
9 |
46 |
6362 |
189 | 29 | 1507 |
98 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_116200018 |
chr17:57354736-57580414 |
Sample_02_1162 |
Stomach |
YCC11 |
18 |
108 |
6348 |
189 | 29 | 1506 |
98 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_083600071 |
chr17:57354998-57561763 |
Sample_02_0836 |
Bone marrow |
TEX-HIST1H3H-WT-Rx_cells |
71 |
68 |
5772 |
176 | 28 | 1322 |
98 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_083500027 |
chr17:57355052-57564200 |
Sample_02_0835 |
Bone marrow |
TEX-HIST1H3H-K27M-Rx_cells |
27 |
60 |
5849 |
177 | 28 | 1334 |
98 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_101700010 |
chr17:57356868-57673409 |
Sample_02_1017 |
Embryo |
H9_Mesendoderm 24h_Hydroxyurea |
10 |
67 |
8952 |
302 | 34 | 2036 |
668 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_130000007 |
chr17:57376028-57567833 |
Sample_02_1300 |
Blood |
KARPAS-45 |
7 |
32 |
5431 |
165 | 23 | 1249 |
98 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_124600042 |
chr17:57378422-57560154 |
Sample_02_1246 |
Brain |
LAN5_ATRA |
42 |
76 |
5091 |
158 | 20 | 1159 |
98 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_097600002 |
chr17:57378751-57606276 |
Sample_02_0976 |
Brain |
H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac |
2 |
77 |
6436 |
190 | 22 | 1553 |
173 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_098400008 |
chr17:57378751-57606336 |
Sample_02_0984 |
Brain |
H3.3K27M-KO_DIPGXIII-C5P5 |
8 |
76 |
6439 |
190 | 22 | 1553 |
173 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_095300004 |
chr17:57395549-57673315 |
Sample_02_0953 |
Brain |
H3.3K27M_1840 |
4 |
109 |
7944 |
284 | 25 | 1837 |
668 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_142900041 |
chr17:57395809-57548037 |
Sample_02_1429 |
Blood |
GM12878_WT |
41 |
46 |
4288 |
144 | 18 | 1014 |
98 |
MSI2,LOC101927557 |
| SE_02_096500001 |
chr17:57395825-57645424 |
Sample_02_0965 |
Brain |
H3.3K27M_HSJ031-C3-Rx_cells |
1 |
108 |
7169 |
250 | 21 | 1662 |
555 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_097900001 |
chr17:57395878-57608129 |
Sample_02_0979 |
Brain |
JN14-BS1_H3.3K27M |
1 |
95 |
6056 |
186 | 21 | 1495 |
173 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_095600001 |
chr17:57395881-57680755 |
Sample_02_0956 |
Brain |
IDH1_2658 |
1 |
135 |
8147 |
295 | 26 | 1947 |
931 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_097100005 |
chr17:57396338-57606669 |
Sample_02_0971 |
Brain |
H3.3K27M_XPS124018_xenograft |
5 |
97 |
6007 |
184 | 21 | 1488 |
173 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_108200001 |
chr17:57396703-57676665 |
Sample_02_1082 |
Retina |
retina |
1 |
135 |
8025 |
289 | 25 | 1891 |
788 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_099800018 |
chr17:57398550-57561884 |
Sample_02_0998 |
Lymphoma |
OCI-LY1_DMSO |
18 |
121 |
4647 |
155 | 19 | 1091 |
98 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_099900049 |
chr17:57398988-57561587 |
Sample_02_0999 |
Lymphoma |
OCI-LY1_966 |
49 |
87 |
4618 |
154 | 19 | 1087 |
98 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_143100026 |
chr17:57399166-57635600 |
Sample_02_1431 |
Blood |
T cell |
26 |
36 |
6793 |
229 | 21 | 1638 |
555 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_083700059 |
chr17:57399524-57562651 |
Sample_02_0837 |
Bone marrow |
TEX-Luciferase-Rx_cells |
59 |
63 |
4642 |
155 | 19 | 1088 |
98 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_078900036 |
chr17:57400545-57606277 |
Sample_02_0789 |
Brain |
3752 |
36 |
75 |
5882 |
182 | 20 | 1475 |
173 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_143300141 |
chr17:57401597-57562606 |
Sample_02_1433 |
Bone |
A673 STAG2 null |
141 |
57 |
4578 |
153 | 18 | 1078 |
49 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_125200006 |
chr17:57402854-57567052 |
Sample_02_1252 |
Bone marrow |
RS4_11_DMSO_10h |
6 |
69 |
4689 |
156 | 18 | 1117 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_106900001 |
chr17:57403683-57684903 |
Sample_02_1069 |
Bone marrow |
Bone marrow aspirate |
1 |
71 |
8031 |
293 | 25 | 2010 |
879 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_104600963 |
chr17:57416878-57533373 |
Sample_02_1046 |
Peripheral blood |
CD4+ cells_CTCL1145 |
963 |
27 |
3355 |
118 | 12 | 711 |
46 |
MSI2,LOC101927557 |
| SE_02_110800005 |
chr17:57419569-57708897 |
Sample_02_1108 |
Brain |
SK-N-BE_2_-C |
5 |
105 |
8236 |
291 | 26 | 1902 |
879 |
LOC101927557,MSI2,LOC101927539,CCDC182 |
| SE_00_005100013 |
chr17:57419794-57678953 |
Sample_00_0051 |
Adrenal gland |
adrenal gland 30y |
13 |
144 |
7500 |
267 | 24 | 1740 |
793 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_125100004 |
chr17:57420139-57606681 |
Sample_02_1251 |
Bone marrow |
RS4_11_AZD1775 _10h |
4 |
60 |
5395 |
159 | 19 | 1312 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_124900007 |
chr17:57421153-57563540 |
Sample_02_1249 |
Bone marrow |
RS4_11_DMSO_4h |
7 |
49 |
4107 |
128 | 17 | 877 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_125000006 |
chr17:57421200-57562896 |
Sample_02_1250 |
Bone marrow |
RS4_11_AZD1775 _4h |
6 |
45 |
4087 |
127 | 17 | 875 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_111200039 |
chr17:57424625-57562889 |
Sample_02_1112 |
T lymphocyte |
THP-6 T-ALL |
39 |
36 |
3966 |
117 | 17 | 850 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_054200009 |
chr17:57424954-57677775 |
Sample_02_0542 |
Brain |
Kelly_ResJQ1 |
9 |
94 |
7295 |
250 | 24 | 1660 |
793 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_063900001 |
chr17:57426322-57555203 |
Sample_02_0639 |
Blood |
T-ALL PDX |
1 |
49 |
3673 |
109 | 16 | 793 |
46 |
MSI2,LOC101927557 |
| SE_02_074000008 |
chr17:57429024-57606669 |
Sample_02_0740 |
Muscle |
RH3 |
8 |
74 |
5129 |
145 | 19 | 1213 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_053900016 |
chr17:57431100-57687870 |
Sample_02_0539 |
Brain |
SK-N-BE_2_-C_GFP_control |
16 |
113 |
7353 |
257 | 24 | 1762 |
879 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_073900001 |
chr17:57433078-57564676 |
Sample_02_0739 |
Blood |
Nalm6 |
1 |
21 |
3790 |
112 | 16 | 813 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_096600007 |
chr17:57436423-57606472 |
Sample_02_0966 |
Brain |
H3.3K27M_JN29-BS3 |
7 |
69 |
4914 |
136 | 18 | 1172 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_090100615 |
chr17:57436476-57555110 |
Sample_02_0901 |
Heart |
left ventricle_LV1471 |
615 |
27 |
3401 |
100 | 15 | 743 |
46 |
MSI2,LOC101927557 |
| SE_02_057300001 |
chr17:57437845-57564998 |
Sample_02_0573 |
Blood |
Nalm6_1 |
1 |
42 |
3666 |
107 | 16 | 793 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_120000001 |
chr17:57437916-57678918 |
Sample_02_1200 |
Brain |
GBM36 |
1 |
88 |
6970 |
243 | 23 | 1593 |
793 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_119700002 |
chr17:57438019-57680615 |
Sample_02_1197 |
Brain |
GBM33 |
2 |
139 |
7006 |
246 | 23 | 1622 |
879 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_119600008 |
chr17:57438027-57630000 |
Sample_02_1196 |
Brain |
GBM32 |
8 |
97 |
5556 |
166 | 18 | 1304 |
262 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_118400014 |
chr17:57438243-57626112 |
Sample_02_1184 |
Brain |
GBM13 |
14 |
72 |
5423 |
159 | 18 | 1296 |
192 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_118700001 |
chr17:57438248-57623296 |
Sample_02_1187 |
Brain |
GBM16 |
1 |
60 |
5325 |
152 | 18 | 1257 |
192 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_117800007 |
chr17:57438387-57606819 |
Sample_02_1178 |
Brain |
GBM07 |
7 |
65 |
4870 |
135 | 18 | 1156 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_096800008 |
chr17:57439196-57606694 |
Sample_02_0968 |
Brain |
H3.3K27M_pcGBM2p18_cells |
8 |
37 |
4841 |
133 | 18 | 1144 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_118600002 |
chr17:57439245-57623811 |
Sample_02_1186 |
Brain |
GBM15 |
2 |
48 |
5321 |
153 | 18 | 1253 |
192 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_095400014 |
chr17:57439397-57611632 |
Sample_02_0954 |
Brain |
H3.3K27WT_2192 |
14 |
43 |
4972 |
138 | 18 | 1155 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_120400055 |
chr17:57439516-57606557 |
Sample_02_1204 |
Brain |
NB2 |
55 |
62 |
4828 |
131 | 18 | 1144 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_118800036 |
chr17:57439583-57606870 |
Sample_02_1188 |
Brain |
GBM18 |
36 |
44 |
4835 |
130 | 18 | 1149 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_120500167 |
chr17:57439675-57578892 |
Sample_02_1205 |
Brain |
NB3 |
167 |
64 |
4041 |
113 | 17 | 917 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_118500021 |
chr17:57439684-57580737 |
Sample_02_1185 |
Brain |
GBM14 |
21 |
52 |
4087 |
114 | 17 | 938 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_117900028 |
chr17:57439699-57578579 |
Sample_02_1179 |
Brain |
GBM08 |
28 |
41 |
4028 |
112 | 17 | 912 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_121100007 |
chr17:57439724-57606678 |
Sample_02_1211 |
Brain |
GBM21 |
7 |
72 |
4827 |
130 | 18 | 1144 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_119100071 |
chr17:57439732-57555416 |
Sample_02_1191 |
Brain |
GBM25 |
71 |
50 |
3316 |
95 | 15 | 715 |
46 |
MSI2,LOC101927557 |
| SE_02_095800065 |
chr17:57439744-57578469 |
Sample_02_0958 |
Brain |
H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft |
65 |
53 |
4023 |
111 | 17 | 912 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_119400015 |
chr17:57439745-57630117 |
Sample_02_1194 |
Brain |
GBM28 |
15 |
85 |
5509 |
161 | 18 | 1283 |
262 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_118200011 |
chr17:57439746-57606596 |
Sample_02_1182 |
Brain |
GBM11 |
11 |
47 |
4823 |
130 | 18 | 1144 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_121200021 |
chr17:57439812-57578670 |
Sample_02_1212 |
Brain |
GBM30 |
21 |
56 |
4030 |
112 | 17 | 915 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_090700594 |
chr17:57439835-57543102 |
Sample_02_0907 |
Heart |
left ventricle_DCM_LV1223 |
594 |
28 |
2967 |
88 | 15 | 594 |
46 |
MSI2,LOC101927557 |
| SE_02_117600017 |
chr17:57439884-57591203 |
Sample_02_1176 |
Brain |
GBM04 |
17 |
65 |
4379 |
124 | 17 | 1032 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_096900032 |
chr17:57439886-57578875 |
Sample_02_0969 |
Brain |
H3.3K27M_PL637 |
32 |
44 |
4037 |
113 | 17 | 917 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_119000016 |
chr17:57439944-57580746 |
Sample_02_1190 |
Brain |
GBM24 |
16 |
56 |
4082 |
114 | 17 | 938 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_075100074 |
chr17:57439951-57561759 |
Sample_02_0751 |
Lymphoma |
Rec-1_WO |
74 |
48 |
3504 |
101 | 16 | 753 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_119500054 |
chr17:57439990-57606695 |
Sample_02_1195 |
Brain |
GBM29 |
54 |
68 |
4821 |
130 | 18 | 1144 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_117500035 |
chr17:57440020-57554059 |
Sample_02_1175 |
Brain |
GBM03 |
35 |
34 |
3271 |
94 | 15 | 700 |
46 |
MSI2,LOC101927557 |
| SE_02_075000145 |
chr17:57440032-57561911 |
Sample_02_0750 |
Lymphoma |
Rec-1_GSI |
145 |
41 |
3507 |
102 | 16 | 753 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_117300614 |
chr17:57440035-57606263 |
Sample_02_1173 |
Brain |
GBM01 |
614 |
44 |
4804 |
130 | 18 | 1144 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_155300026 |
chr17:57440035-57635671 |
Sample_02_1553 |
Gastrointestinal Stromal |
GIST-2_KIT e11 |
26 |
65 |
5678 |
177 | 18 | 1305 |
503 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_119200012 |
chr17:57440038-57625297 |
Sample_02_1192 |
Brain |
GBM26 |
12 |
60 |
5359 |
154 | 18 | 1273 |
192 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_128700030 |
chr17:57458415-57607952 |
Sample_02_1287 |
Lung |
NCI-H510_p8-15 |
30 |
59 |
4327 |
115 | 13 | 1068 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_054000014 |
chr17:57458683-57676899 |
Sample_02_0540 |
Brain |
SK-N-BE_2_-C_PI3K_engineered |
14 |
87 |
6312 |
218 | 17 | 1466 |
749 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_111100080 |
chr17:57459010-57559160 |
Sample_02_1111 |
Other |
HGrC1_SMAD2/3KO |
80 |
44 |
2867 |
81 | 11 | 665 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_124500062 |
chr17:57465629-57545633 |
Sample_02_1245 |
Brain |
LAN5_Ethanol |
62 |
30 |
2294 |
67 | 10 | 536 |
46 |
MSI2,LOC101927557 |
| SE_02_090201012 |
chr17:57468669-57554910 |
Sample_02_0902 |
Heart |
left ventricle_LV1558 |
1012 |
17 |
2476 |
69 | 10 | 566 |
46 |
MSI2,LOC101927557 |
| SE_02_098900210 |
chr17:57469627-57628105 |
Sample_02_0989 |
Kidney |
kidney cortex_WT |
210 |
42 |
4589 |
132 | 13 | 1103 |
262 |
LOC101927557,MSI2,LOC101927539 |
| SE_01_011100002 |
chr17:57472762-57644396 |
Sample_01_0111 |
Brain |
SK-N-SH |
2 |
50 |
5002 |
160 | 13 | 1138 |
503 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_095700092 |
chr17:57476991-57563961 |
Sample_02_0957 |
Brain |
429_Tumor_H3.3K27WT |
92 |
24 |
2519 |
61 | 11 | 530 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_121000024 |
chr17:57477010-57579090 |
Sample_02_1210 |
Brain |
GBM17 |
24 |
42 |
2987 |
73 | 12 | 696 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_054400019 |
chr17:57484712-57678405 |
Sample_02_0544 |
Brain |
Kelly_ResVeh |
19 |
67 |
5644 |
186 | 16 | 1293 |
793 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_104700204 |
chr17:57485706-57677643 |
Sample_02_1047 |
Peripheral blood |
CD4+ cells_CTCL1181 |
204 |
74 |
5589 |
181 | 16 | 1278 |
793 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_097800138 |
chr17:57485973-57554181 |
Sample_02_0978 |
Brain |
2168_IDH1 |
138 |
15 |
1975 |
40 | 8 | 424 |
46 |
MSI2,LOC101927557 |
| SE_02_107000365 |
chr17:57486892-57532354 |
Sample_02_1070 |
Blood |
SupT1_WT |
365 |
13 |
1329 |
27 | 4 | 226 |
46 |
MSI2,LOC101927557 |
| SE_02_096100028 |
chr17:57489109-57563957 |
Sample_02_0961 |
Brain |
H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells |
28 |
14 |
2166 |
44 | 8 | 453 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_101500340 |
chr17:57494954-57561464 |
Sample_02_1015 |
Embryo |
H9_ Undifferentiated |
340 |
23 |
1912 |
36 | 8 | 424 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_077500501 |
chr17:57495258-57578323 |
Sample_02_0775 |
Pancreas |
EndoC-BH1_SE |
501 |
21 |
2426 |
46 | 9 | 579 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_156500041 |
chr17:57497042-57571414 |
Sample_02_1565 |
Gastrointestinal Stromal |
Gastrointestinal stromal tumor |
41 |
19 |
2156 |
44 | 9 | 515 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_123700001 |
chr17:57499749-57678226 |
Sample_02_1237 |
Skin |
MKL2_virus_positive |
1 |
41 |
5172 |
169 | 15 | 1199 |
793 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_128500003 |
chr17:57499963-57615160 |
Sample_02_1285 |
Lung |
NCI-H2171_p8-15 |
3 |
74 |
3319 |
68 | 10 | 811 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_110400003 |
chr17:57501066-57708897 |
Sample_02_1104 |
Brain |
NB-69 |
3 |
70 |
5875 |
194 | 17 | 1360 |
879 |
LOC101927557,MSI2,LOC101927539,CCDC182 |
| SE_02_155600024 |
chr17:57501118-57555892 |
Sample_02_1556 |
Gastrointestinal Stromal |
GIST-5_KIT e9 |
24 |
25 |
1554 |
27 | 7 | 347 |
46 |
MSI2,LOC101927557 |
| SE_02_155800028 |
chr17:57501120-57558684 |
Sample_02_1558 |
Gastrointestinal Stromal |
GIST-7_PDGFRA e18 |
28 |
28 |
1634 |
29 | 8 | 377 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_110100046 |
chr17:57501123-57678589 |
Sample_02_1101 |
Brain |
KELLY |
46 |
89 |
5130 |
169 | 15 | 1198 |
793 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_143200567 |
chr17:57501128-57579034 |
Sample_02_1432 |
Bone |
A673 STAG2 WT |
567 |
33 |
2269 |
46 | 9 | 548 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_118900152 |
chr17:57501154-57578692 |
Sample_02_1189 |
Brain |
GBM22 |
152 |
20 |
2248 |
44 | 9 | 542 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_054100066 |
chr17:57501160-57568088 |
Sample_02_0541 |
Brain |
Kelly_NaiveJQ1 |
66 |
22 |
1929 |
37 | 8 | 467 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_047401387 |
chr17:57501166-57555208 |
Sample_02_0474 |
Fibroblast |
umbilical cord Fibroblast |
1387 |
12 |
1523 |
26 | 7 | 342 |
46 |
MSI2,LOC101927557 |
| SE_02_097000226 |
chr17:57501171-57578412 |
Sample_02_0970 |
Brain |
H3.3K27M_XHSJ019-X1-1-Rx_xenograft |
226 |
34 |
2238 |
43 | 9 | 539 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_055300077 |
chr17:57501264-57581938 |
Sample_02_0553 |
Other |
HSSY2 shCt |
77 |
34 |
2340 |
47 | 9 | 590 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_152700359 |
chr17:57501306-57535834 |
Sample_02_1527 |
Embryo |
naive embryonic stem cell |
359 |
20 |
976 |
17 | 4 | 157 |
46 |
MSI2,LOC101927557 |
| SE_02_156000509 |
chr17:57501336-57580501 |
Sample_02_1560 |
Gastrointestinal Stromal |
GIST-9_PDGFRA e18 |
509 |
18 |
2295 |
46 | 9 | 563 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_149900015 |
chr17:57501424-57637367 |
Sample_02_1499 |
Brain |
BE_2_-C |
15 |
49 |
3947 |
115 | 10 | 938 |
503 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_106800018 |
chr17:57501451-57606207 |
Sample_02_1068 |
Brain |
NGP_ctrl |
18 |
38 |
3017 |
62 | 10 | 770 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_105800159 |
chr17:57501676-57580509 |
Sample_02_1058 |
Bone |
A673_SA2 Rescue |
159 |
33 |
2291 |
46 | 9 | 563 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_155500130 |
chr17:57501909-57558549 |
Sample_02_1555 |
Gastrointestinal Stromal |
GIST-4_KIT e9 |
130 |
21 |
1602 |
29 | 8 | 376 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_106400014 |
chr17:57502396-57605911 |
Sample_02_1064 |
Brain |
CLB-GA-Dinaciclib_8h |
14 |
26 |
2989 |
62 | 10 | 758 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_046200016 |
chr17:57502718-57615321 |
Sample_02_0462 |
Lung |
NCI-H2171 cells |
16 |
66 |
3230 |
67 | 10 | 804 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_128800010 |
chr17:57502734-57606220 |
Sample_02_1288 |
Lung |
NCI-H524_p8-15 |
10 |
47 |
2982 |
61 | 10 | 768 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_053800040 |
chr17:57502938-57547360 |
Sample_02_0538 |
Brain |
SK-N-BE_2_-C_resistant_JQ1 |
40 |
29 |
1251 |
21 | 7 | 287 |
46 |
MSI2,LOC101927557 |
| SE_02_123800005 |
chr17:57503420-57679548 |
Sample_02_1238 |
Skin |
MS1_virus_positive |
5 |
57 |
5095 |
170 | 15 | 1181 |
812 |
LOC101927557,MSI2,LOC101927539,AKAP1,CCDC182,COIL,MRPS23,DYNLL2 |
| SE_02_110700188 |
chr17:57503589-57606411 |
Sample_02_1107 |
Brain |
SK-N-AS |
188 |
45 |
2970 |
60 | 10 | 752 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_144500748 |
chr17:57503659-57560548 |
Sample_02_1445 |
Adipose |
SW872_TAZ4SA |
748 |
20 |
1628 |
29 | 8 | 358 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_075800016 |
chr17:57504110-57578550 |
Sample_02_0758 |
Peripheral blood |
REH |
16 |
32 |
2162 |
41 | 9 | 519 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_054300148 |
chr17:57504290-57556109 |
Sample_02_0543 |
Brain |
Kelly_vehicle |
148 |
17 |
1470 |
25 | 8 | 327 |
46 |
MSI2,LOC101927557 |
| SE_02_122400063 |
chr17:57505049-57671678 |
Sample_02_1224 |
Bone marrow |
normal plasma cell |
63 |
88 |
4809 |
159 | 14 | 1091 |
616 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_144300035 |
chr17:57505074-57612722 |
Sample_02_1443 |
Lung |
H69M |
35 |
26 |
3089 |
66 | 10 | 773 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_154400083 |
chr17:57505089-57556015 |
Sample_02_1544 |
Gastrointestinal Stromal |
GIST-882 |
83 |
26 |
1447 |
25 | 7 | 327 |
46 |
MSI2,LOC101927557 |
| SE_02_088500008 |
chr17:57505107-57562702 |
Sample_02_0885 |
Blood |
NALM6_2 |
8 |
9 |
1649 |
32 | 8 | 362 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_109700024 |
chr17:57505164-57563473 |
Sample_02_1097 |
Haematopoietic and lymphoid tissue |
697 |
24 |
29 |
1669 |
32 | 8 | 362 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_156400026 |
chr17:57505456-57554810 |
Sample_02_1564 |
Gastrointestinal Stromal |
GIST-430 |
26 |
23 |
1393 |
24 | 7 | 322 |
46 |
MSI2,LOC101927557 |
| SE_02_055600224 |
chr17:57505601-57548881 |
Sample_02_0556 |
iPSCs |
BOFS hiPSC cl1 |
224 |
9 |
1214 |
18 | 6 | 294 |
46 |
MSI2,LOC101927557 |
| SE_02_155400135 |
chr17:57505613-57572135 |
Sample_02_1554 |
Gastrointestinal Stromal |
GIST-3_KIT e11 |
135 |
16 |
1908 |
36 | 8 | 476 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_138400109 |
chr17:57505687-57579652 |
Sample_02_1384 |
Other |
induced pluripotent stem cell derived Neuronal progenitor cell |
109 |
21 |
2156 |
41 | 8 | 540 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_055700420 |
chr17:57505764-57558769 |
Sample_02_0557 |
iPSCs |
WT hiPSC#1 |
420 |
13 |
1503 |
24 | 7 | 357 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_068400145 |
chr17:57505791-57588336 |
Sample_02_0684 |
Lung |
DMS79 |
145 |
32 |
2393 |
48 | 8 | 621 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_069300344 |
chr17:57505833-57586400 |
Sample_02_0693 |
Lung |
NCI-H69_no infection |
344 |
30 |
2341 |
47 | 8 | 594 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_106300007 |
chr17:57505875-57677563 |
Sample_02_1063 |
Brain |
CLB-GA-control |
7 |
43 |
4970 |
162 | 14 | 1164 |
793 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_066300498 |
chr17:57505877-57561839 |
Sample_02_0663 |
Thyroid |
TT |
498 |
27 |
1597 |
28 | 7 | 359 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_123500152 |
chr17:57505954-57567890 |
Sample_02_1235 |
Brain |
Neuroblastoma PDX tumour cells |
152 |
21 |
1787 |
32 | 7 | 445 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_119800089 |
chr17:57505989-57606459 |
Sample_02_1198 |
Brain |
GBM34 |
89 |
44 |
2902 |
57 | 9 | 749 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_093200024 |
chr17:57506015-57605792 |
Sample_02_0932 |
Embryo |
H9 WT_1 |
24 |
35 |
2883 |
57 | 9 | 736 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_01_009500029 |
chr17:57506018-57558674 |
Sample_01_0095 |
Embryo |
neuroepithelial stem cell stably expressing HES5 originated from H9 |
29 |
15 |
1494 |
24 | 7 | 353 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_155900090 |
chr17:57506057-57558754 |
Sample_02_1559 |
Gastrointestinal Stromal |
GIST-8_PDGFRA e18 |
90 |
20 |
1497 |
24 | 7 | 350 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_121300922 |
chr17:57506084-57585854 |
Sample_02_1213 |
Brain |
GBM31 |
922 |
26 |
2320 |
46 | 8 | 573 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_092101097 |
chr17:57506086-57555083 |
Sample_02_0921 |
Heart |
embryonic heart_CS22 |
1097 |
14 |
1387 |
21 | 6 | 314 |
46 |
MSI2,LOC101927557 |
| SE_02_096200167 |
chr17:57506121-57571543 |
Sample_02_0962 |
Brain |
H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells |
167 |
39 |
1886 |
36 | 8 | 461 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_101600101 |
chr17:57506130-57605513 |
Sample_02_1016 |
Embryo |
H9_Mesendoderm_24h |
101 |
27 |
2874 |
57 | 9 | 731 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_096700368 |
chr17:57506192-57555050 |
Sample_02_0967 |
Brain |
H3.3K27M_JN57 |
368 |
13 |
1385 |
21 | 6 | 311 |
46 |
MSI2,LOC101927557 |
| SE_02_092200741 |
chr17:57506227-57552454 |
Sample_02_0922 |
Heart |
fetal heart_PCW10_12434 |
741 |
16 |
1313 |
21 | 6 | 285 |
46 |
MSI2,LOC101927557 |
| SE_02_120300555 |
chr17:57506245-57606725 |
Sample_02_1203 |
Brain |
NB1 |
555 |
27 |
2905 |
57 | 9 | 742 |
121 |
LOC101927557,MSI2,LOC101927539 |
| SE_02_105900653 |
chr17:57506322-57559089 |
Sample_02_1059 |
Bone |
A673_WT |
653 |
19 |
1500 |
25 | 7 | 346 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_147300657 |
chr17:57506322-57559089 |
Sample_02_1473 |
Bone |
A-673 |
657 |
19 |
1500 |
25 | 7 | 346 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_093100141 |
chr17:57506412-57580317 |
Sample_02_0931 |
Embryo |
H9 UTXKO |
141 |
13 |
2149 |
41 | 8 | 529 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_062900258 |
chr17:57506454-57554318 |
Sample_02_0629 |
Gastrointestinal Stromal |
GIST-T1_DMSO |
258 |
8 |
1356 |
21 | 6 | 301 |
46 |
MSI2,LOC101927557 |
| SE_02_063100211 |
chr17:57506508-57549255 |
Sample_02_0631 |
Gastrointestinal Stromal |
GIST-T1_JQ1 |
211 |
10 |
1203 |
18 | 6 | 275 |
46 |
MSI2,LOC101927557 |
| SE_02_092300812 |
chr17:57506533-57554884 |
Sample_02_0923 |
Heart |
fetal heart_PCW10_12522 |
812 |
16 |
1368 |
21 | 6 | 302 |
46 |
MSI2,LOC101927557 |
| SE_02_053600045 |
chr17:57506540-57542637 |
Sample_02_0536 |
Brain |
SK-N-BE_2_-C_resistant_vehicle |
45 |
13 |
1019 |
15 | 6 | 181 |
46 |
MSI2,LOC101927557 |
| SE_02_092400728 |
chr17:57506543-57554172 |
Sample_02_0924 |
Heart |
fetal heart_PCW10_12569 |
728 |
19 |
1346 |
21 | 6 | 291 |
46 |
MSI2,LOC101927557 |
| SE_02_095900065 |
chr17:57506572-57585859 |
Sample_02_0959 |
Brain |
H3.3K27M_BT245p6_cells |
65 |
23 |
2305 |
46 | 8 | 561 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_154600131 |
chr17:57506593-57550680 |
Sample_02_1546 |
Gastrointestinal Stromal |
GIST-430/654 |
131 |
13 |
1242 |
19 | 6 | 274 |
46 |
MSI2,LOC101927557 |
| SE_02_093400057 |
chr17:57506604-57558729 |
Sample_02_0934 |
Embryo |
H7-WT |
57 |
15 |
1481 |
24 | 7 | 337 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_087700057 |
chr17:57506667-57558855 |
Sample_02_0877 |
Muscle |
SMS-CTR_CASZ1b_Dox |
57 |
25 |
1486 |
25 | 7 | 337 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_087600048 |
chr17:57506714-57560549 |
Sample_02_0876 |
Muscle |
SMS-CTR_CASZ1b_Ctrl |
48 |
20 |
1535 |
26 | 7 | 337 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_074400595 |
chr17:57506715-57530626 |
Sample_02_0744 |
Embryo |
ES derived cardiac mesoderm_day5 |
595 |
6 |
668 |
7 | 2 | 107 |
46 |
MSI2,LOC101927557 |
| SE_02_154200149 |
chr17:57506780-57532533 |
Sample_02_1542 |
Gastrointestinal Stromal |
GIST-T1 |
149 |
8 |
738 |
10 | 2 | 108 |
46 |
MSI2,LOC101927557 |
| SE_02_049901430 |
chr17:57506806-57530795 |
Sample_02_0499 |
Fetal lung |
IMR90 IR Senescence |
1430 |
16 |
676 |
7 | 2 | 106 |
46 |
MSI2,LOC101927557 |
| SE_02_106500501 |
chr17:57508683-57553053 |
Sample_02_1065 |
Lymphoma |
KARPAS-422_DMSO_8d |
501 |
13 |
1256 |
21 | 6 | 272 |
46 |
MSI2,LOC101927557 |
| SE_02_069400022 |
chr17:57510714-57578646 |
Sample_02_0694 |
Lung |
NCI-H82_no infection |
22 |
33 |
1967 |
39 | 8 | 486 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_108000617 |
chr17:57510971-57558802 |
Sample_02_1080 |
Muscle |
JR1 shCtrl |
617 |
24 |
1348 |
24 | 7 | 324 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_074100380 |
chr17:57511427-57558633 |
Sample_02_0741 |
Muscle |
RH30 |
380 |
15 |
1324 |
24 | 7 | 324 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_069100106 |
chr17:57511615-57564671 |
Sample_02_0691 |
Lung |
NCI-H524_no infection |
106 |
18 |
1513 |
29 | 7 | 343 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_068600574 |
chr17:57512611-57527958 |
Sample_02_0686 |
Lung |
NCI-H128_no infection |
574 |
5 |
407 |
6 | 0 | 90 |
0 |
MSI2,LOC101927557 |
| SE_02_076201124 |
chr17:57513127-57532091 |
Sample_02_0762 |
Podocyte |
podocyte_CTL |
1124 |
5 |
536 |
9 | 2 | 96 |
46 |
MSI2,LOC101927557 |
| SE_02_077000431 |
chr17:57513482-57538967 |
Sample_02_0770 |
Ovary |
OVCA429_shLuc |
431 |
14 |
718 |
14 | 4 | 152 |
46 |
MSI2,LOC101927557 |
| SE_02_076700422 |
chr17:57513582-57544260 |
Sample_02_0767 |
Ovary |
OVCA429 |
422 |
18 |
862 |
15 | 6 | 188 |
46 |
MSI2,LOC101927557 |
| SE_02_157400031 |
chr17:57514170-57553101 |
Sample_02_1574 |
Blood |
JURKAT |
31 |
22 |
1096 |
21 | 6 | 264 |
46 |
MSI2,LOC101927557 |
| SE_02_099100924 |
chr17:57514871-57558918 |
Sample_02_0991 |
Breast cancer cell line lung metastatic variant |
MDA-MB-231 LM2 |
924 |
6 |
1254 |
25 | 7 | 308 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_076900568 |
chr17:57516189-57559002 |
Sample_02_0769 |
Ovary |
HEYA8 |
568 |
21 |
1223 |
24 | 7 | 307 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_125500059 |
chr17:57516649-57561897 |
Sample_02_1255 |
Bladder |
Bladder tumor Luminal2 |
59 |
18 |
1295 |
26 | 7 | 309 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_108100177 |
chr17:57516669-57579968 |
Sample_02_1081 |
Muscle |
CTR shCtrl |
177 |
34 |
1857 |
38 | 8 | 490 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_077100238 |
chr17:57516924-57557816 |
Sample_02_0771 |
Ovary |
OVCA429_shGRHL2 |
238 |
23 |
1166 |
20 | 7 | 301 |
46 |
MSI2,LOC101927557 |
| SE_02_049400970 |
chr17:57517357-57561480 |
Sample_02_0494 |
Islets |
differentiated hESCs Late pancreatic progenitor cells |
970 |
9 |
1270 |
24 | 7 | 303 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_076300599 |
chr17:57517459-57531012 |
Sample_02_0763 |
Podocyte |
podocyte_DEX |
599 |
2 |
389 |
3 | 2 | 69 |
46 |
MSI2,LOC101927557 |
| SE_02_158500055 |
chr17:57518377-57561806 |
Sample_02_1585 |
Blood |
SupB15 DMSO |
55 |
14 |
1258 |
23 | 7 | 301 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_093300103 |
chr17:57518886-57558540 |
Sample_02_0933 |
Embryo |
H7 UTXKO |
103 |
8 |
1136 |
19 | 7 | 270 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_080800204 |
chr17:57519498-57527214 |
Sample_02_0808 |
Ovary |
RMG1_ARID1A KO |
204 |
1 |
207 |
0 | 0 | 26 |
0 |
MSI2,LOC101927557 |
| SE_02_105100474 |
chr17:57519590-57545701 |
Sample_02_1051 |
Esophagus |
Eso26 |
474 |
9 |
739 |
10 | 6 | 161 |
46 |
MSI2,LOC101927557 |
| SE_02_085700160 |
chr17:57520801-57545703 |
Sample_02_0857 |
Glioblastoma |
Glioblastoma neurosphere cell_HF-3035 |
160 |
1 |
713 |
10 | 6 | 157 |
46 |
MSI2,LOC101927557 |
| SE_02_119300078 |
chr17:57520843-57545831 |
Sample_02_1193 |
Brain |
GBM27 |
78 |
1 |
718 |
10 | 6 | 157 |
46 |
MSI2,LOC101927557 |
| SE_02_118100215 |
chr17:57520862-57535978 |
Sample_02_1181 |
Brain |
GBM10 |
215 |
1 |
443 |
6 | 3 | 49 |
46 |
MSI2,LOC101927557 |
| SE_02_097700002 |
chr17:57521114-57546367 |
Sample_02_0977 |
Brain |
2089_H3.3K27WT |
2 |
1 |
732 |
10 | 6 | 168 |
46 |
MSI2,LOC101927557 |
| SE_02_125901100 |
chr17:57522002-57530603 |
Sample_02_1259 |
Bone |
Im-GCT-3504_G34W-repair_WT_4C7 |
1100 |
3 |
247 |
1 | 2 | 32 |
46 |
MSI2,LOC101927557 |
| SE_02_126800800 |
chr17:57522526-57531823 |
Sample_02_1268 |
Bone |
Im-GCT-4072_G34W unedited_U3 |
800 |
2 |
275 |
2 | 2 | 32 |
46 |
MSI2,LOC101927557 |
| SE_02_141000826 |
chr17:57522579-57534200 |
Sample_02_1410 |
Brain |
GSC6 |
826 |
1 |
343 |
5 | 2 | 33 |
46 |
MSI2,LOC101927557 |
| SE_02_085600253 |
chr17:57522964-57578542 |
Sample_02_0856 |
Glioblastoma |
Glioblastoma neurosphere cell_HF-3016 |
253 |
11 |
1639 |
32 | 8 | 422 |
46 |
MSI2,LOC101927557,LOC101927539 |
| SE_02_080100016 |
chr17:57523060-57554172 |
Sample_02_0801 |
Brain |
2235 |
16 |
10 |
888 |
15 | 6 | 214 |
46 |
MSI2,LOC101927557 |
| SE_02_080000088 |
chr17:57523150-57554034 |
Sample_02_0800 |
Brain |
3679 |
88 |
12 |
884 |
15 | 6 | 210 |
46 |
MSI2,LOC101927557 |
