Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_069400143 chr1:10671472-10695162 23690 143 20 7291283425348 CASZ1
SE_02_069400217 chr1:1298740-1307856 9116 217 3 3344720581550 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_069400178 chr1:144546403-144561531 15128 178 6 2332000 SRGAP2-AS1,NBPF15
SE_02_069400058 chr1:146369646-146388261 18615 58 9 0362000 RNVU1-18,NUDT4P1
SE_02_069400069 chr1:149830533-149834296 3763 69 1 00019205 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_069400149 chr1:149842865-149845694 2829 149 1 6888146 HIST2H4B,HIST2H3D,HIST2H2AA3,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H2AB,HIST2H2BE,HIST2H2AC,HIST2H2BC,HIST2H2AA4
SE_02_069400110 chr1:149847715-149850906 3191 110 1 601300136 HIST2H2BC,HIST2H4B,BOLA1,HIST2H2AA3,HIST2H2BF,HIST2H3D,HIST2H3A,HIST2H3C,HIST2H2AB,HIST2H2BE,HIST2H2AC,HIST2H2AA4
SE_02_069400111 chr1:149851052-149855133 4081 111 1 10052311 HIST2H2AA4,HIST2H3C,HIST2H4B,BOLA1,HIST2H2AA3,HIST2H2BF,HIST2H3D,HIST2H3A,HIST2H2AB,HIST2H2BE,HIST2H2AC,HIST2H2BC
SE_02_069400072 chr1:149859507-149863955 4448 72 1 00019207 HIST2H4A,HIST2H4B,BOLA1,HIST2H2AA3,HIST2H2BF,HIST2H3D,HIST2H3A,HIST2H3C,HIST2H2AA4,HIST2H2AB,HIST2H2BE,HIST2H2AC,HIST2H2BC,SV2A
SE_02_069400158 chr1:150364104-150367099 2995 158 1 85136045142 RPRD2,PRPF3
SE_02_069400148 chr1:153563532-153599065 35533 148 13 943402055285 S100A2,S100A6,S100A1,S100A13,S100A4,S100A5,S100A14,S100A3,LOC101928034,S100A16,CHTOP
SE_02_069400218 chr1:154999563-155017903 18340 218 9 38218726021484 ZBTB7B,CKS1B,PBXIP1,SHC1,DCST2,PYGO2,LENEP,ADAM15,EFNA4,LOC100505666,MIR4258,FLAD1,DCST1,CLK2,EFNA3,PMVK,FAM189B
SE_02_069400154 chr1:156073361-156106526 33165 154 13 70529832731450 MEX3A,LMNA,LAMTOR2,RAB25,UBQLN4,SEMA4A
SE_02_069400203 chr1:156160810-156182932 22122 203 12 5405830951009 SEMA4A,SLC25A44,LMNA,PMF1
SE_02_069400068 chr1:156746737-156761294 14557 68 5 365223070530 HDGF,CRABP2,RRNAD1,ISG20L2,PRCC,MRPL24
SE_02_069400033 chr1:15833803-15850698 16895 33 4 478486475732 FLJ37453,SPEN,UQCRHL
SE_02_069400071 chr1:160360707-160376139 15432 71 6 3881763147690 NHLH1,SUMO1P3,NCSTN,VANGL2,COPA,PEX19,DCAF8
SE_02_069400018 chr1:16498344-16519585 21241 18 4 562633100 RNVU1-18,RNU1-1,CROCCP3,MIR3675,FAM231B
SE_02_069400137 chr1:165234256-165237308 3052 137 2 6320590 LMX1A
SE_02_069400108 chr1:165827517-165833613 6096 108 2 17716057152 UCK2,TMCO1,MGST3
SE_02_069400050 chr1:16662049-16667581 5532 50 3 60000 RNVU1-18,FAM231C,MST1P2,CROCCP2,NBPF1
SE_02_069400145 chr1:167220875-167234338 13463 145 9 3112329157 POU2F1,LINC01363
SE_02_069400035 chr1:16739580-16746248 6668 35 6 1200094 RNVU1-18,MST1L,ESPNP,FAM231A
SE_02_069400009 chr1:16895165-16915207 20042 9 9 7506960264 RNVU1-18,CROCC,MFAP2,ATP13A2
SE_02_069400187 chr1:180339921-180363623 23702 187 21 548183011147 ACBD6,LHX4-AS1
SE_02_069400230 chr1:186455198-186480862 25664 230 13 54332812450 PDC,LOC102724919
SE_02_069400213 chr1:201923932-201944503 20571 213 12 557743450 LMOD1,SHISA4,RNPEP,TIMM17A
SE_02_069400133 chr1:203252263-203291632 39369 133 12 1090367154690 LINC01353,CHIT1,LINC01136,BTG2,FMOD
SE_02_069400201 chr1:205331828-205361095 29267 201 14 91148401111279 KLHDC8A,LEMD1-AS1,NUAK2
SE_02_069400233 chr1:211483857-211492058 8201 233 5 283640690 RD3
SE_02_069400156 chr1:215566548-215570546 3998 156 1 85309217 KCTD3
SE_02_069400015 chr1:216686868-216723398 36530 15 13 961401332160 ESRRG
SE_02_069400170 chr1:225650412-225654262 3850 170 1 8310049270 ENAH
SE_02_069400197 chr1:23341300-23344333 3033 197 2 741305293 HNRNPR,ZNF436-AS1,ZNF436
SE_02_069400025 chr1:234588365-234620514 32149 25 13 89715240780 IRF2BP2,LOC101927787,LINC00184,COA6
SE_02_069400138 chr1:23553790-23563053 9263 138 5 340731135382 ID3,E2F2,LOC101928163
SE_02_069400165 chr1:244048659-244055308 6649 165 2 13420198477 ZBTB18
SE_02_069400177 chr1:25904103-25910994 6891 177 2 161136083446 STMN1,MIR3917,AUNIP,PAQR7
SE_02_069400062 chr1:26687412-26706437 19025 62 5 4271731348600 ARID1A,RPS6KA1
SE_02_069400128 chr1:27520521-27537388 16867 128 6 4351122183152 AHDC1,WASF2,FGR
SE_02_069400014 chr1:28505967-28511090 5123 14 1 20718800419 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_069400227 chr1:35191078-35193192 2114 227 1 8024047405 SFPQ
SE_02_069400157 chr1:42328924-42341501 12577 157 7 31678253325 FOXJ3,RIMKLA
SE_02_069400060 chr1:46301183-46330196 29013 60 6 797519089429 UQCRH,LRRC41,NSUN4
SE_02_069400155 chr1:53109487-53146637 37150 155 12 1222607494728 SLC1A7,PODN,CPT2
SE_02_069400016 chr1:54289879-54364001 74122 16 48 222173103240 SSBP3,CYB5RL,MRPL37,ACOT11,TCEANC2
SE_02_069400090 chr1:62428165-62439391 11226 90 3 313249846330 USP1
SE_02_069400061 chr1:77976880-77984226 7346 61 2 2159410119 FUBP1,DNAJB4
SE_02_069400089 chr1:84685565-84716499 30934 89 16 716196063276 SSX2IP
SE_02_069400037 chr1:8665044-8712774 47730 37 15 11612084510 RERE
SE_02_069400198 chr1:8876742-8879774 3032 198 1 8615010301 ENO1,ENO1-AS1,MIR6728
SE_02_069400135 chr1:9822403-9861481 39078 135 17 10323632155919 CLSTN1,CTNNBIP1
SE_02_069400116 chr1:99627327-99649262 21935 116 6 622520129102 MIR548N,PALMD
SE_02_069400049 chr1:99811452-99857539 46087 49 16 1202670164273 AGL,FRRS1
SE_02_069400011 chr1_KI270713v1_random:20954-22911 1957 11 3 00000 RNU1-1
SE_02_069400189 chr1_KI270765v1_alt:57758-79406 21648 189 6 00000
SE_02_069400017 chr10:21507289-21532563 25274 17 22 4612206171070 SKIDA1,MLLT10,CASC10,MIR1915
SE_02_069400228 chr11:63910030-63930316 20286 228 4 48119002841477 RCOR2,MARK2,RNU6-45P,NAA40,COX8A
SE_02_069400021 chr11:65476556-65516710 40154 21 14 111913874441018 MALAT1,SCYL1,LTBP3,MIR612,SLC25A45,EHBP1L1,MAP3K11,DPF2,SSSCA1,CDC42EP2,FRMD8,TIGD3,FAM89B
SE_02_069400042 chr12:121797534-121805627 8093 42 3 202870135909 SETD1B,LINC01089,RHOF
SE_02_069400225 chr12:124518139-124553772 35633 225 15 11731143105160 NCOR2
SE_02_069400136 chr12:124904827-124940422 35595 136 7 12441074711108 MIR5188,UBC,SCARB1,DHX37
SE_02_069400097 chr12:3199803-3248863 49060 97 22 1737181720481 TSPAN9
SE_02_069400085 chr12:45725965-45732017 6052 85 2 1297079526 ARID2,LINC00938
SE_02_069400044 chr12:46263194-46271921 8727 44 2 20752452494 SLC38A1
SE_02_069400191 chr12:49200579-49235024 34445 191 13 82743115962 TUBA1C,TUBA1A
SE_02_069400020 chr12:54255159-54287073 31914 20 10 8301240274837 CBX5,HNRNPA1,COPZ1,NFE2,MIR3198-2
SE_02_069400121 chr12:56674346-56688368 14022 121 7 471253035257 PTGES3,NACA,BAZ2A,ATP5B,SNORD59B,SNORD59A
SE_02_069400163 chr12:6758162-6778938 20776 163 6 56939432711984 PTMS,LAG3,GPR162,P3H3,COPS7A,MLF2,CD4
SE_02_069400204 chr13:19780151-19782992 2841 204 2 6833021138 PSPC1
SE_02_069400144 chr13:20814048-20848509 34461 144 16 8595471164165 XPO4,N6AMT2
SE_02_069400026 chr13:25164009-25172721 8712 26 2 220220109723 AMER2,LINC00463,LINC01053
SE_02_069400164 chr13:26512673-26545060 32387 164 13 957134900 WASF3
SE_02_069400051 chr13:27250753-27264137 13384 51 2 484144038286 SNORD102,SNORA27,RPL21,LINC00412,RASL11A
SE_02_069400231 chr13:30463713-30465970 2257 231 1 471905174 HMGB1,LINC01058
SE_02_069400019 chr13:35469976-35485532 15556 19 10 364181227471 MAB21L1,NBEA
SE_02_069400040 chr13:36882947-36921323 38376 40 18 1099102568151 SMAD9,RFXAP
SE_02_069400066 chr13:46552427-46587298 34871 66 11 824195375267 LRCH1
SE_02_069400215 chr13:46604558-46643500 38942 215 16 10272007890 LRCH1
SE_02_069400076 chr13:50077580-50082049 4469 76 2 873403869 DLEU2,DLEU1,MIR16-1,MIR15A
SE_02_069400065 chr13:71852833-71879268 26435 65 7 62081363347 DACH1
SE_02_069400091 chr13:91347606-91350397 2791 91 1 602076216 MIR17HG,MIR92A1,MIR19B1,MIR20A,MIR19A,MIR17,GPC5,MIR18A
SE_02_069400193 chr13:93226155-93229841 3686 193 1 1188156220 GPC6
SE_02_069400078 chr13:94470655-94482440 11785 78 7 28140047148 DCT
SE_02_069400105 chr14:21266905-21280521 13616 105 3 3893102898 HNRNPC,RPGRIP1
SE_02_069400054 chr14:23300395-23303385 2990 54 1 754053580 PPP1R3E,SLC22A17,PABPN1,HOMEZ,BCL2L2
SE_02_069400064 chr14:23321422-23323125 1703 64 1 4814057324 BCL2L2-PABPN1,PABPN1,PPP1R3E,SLC22A17,EFS,HOMEZ,IL25,BCL2L2
SE_02_069400059 chr14:28766973-28775050 8077 59 1 12861233636 LINC01551,FOXG1,FOXG1-AS1
SE_02_069400147 chr14:32201071-32226361 25290 147 7 6751803280 RNU6-1,RNU6-7,AKAP6
SE_02_069400109 chr14:34546016-34556959 10943 109 2 22684030 RNVU1-18,EAPP
SE_02_069400008 chr14:56115028-56148841 33813 8 23 9531868154235 PELI2
SE_02_069400010 chr14:56729319-56786667 57348 10 19 14453363540 OTX2,OTX2-AS1
SE_02_069400004 chr14:56805800-56816803 11003 4 1 25160204320 OTX2-AS1,OTX2
SE_02_069400126 chr14:57034961-57081313 46352 126 17 12456142170 AP5M1
SE_02_069400141 chr14:57980969-57984579 3610 141 2 11814090 SLC35F4
SE_02_069400012 chr14:59725116-59729499 4383 12 1 1154400245 RTN1,MIR5586
SE_02_069400055 chr15:37077357-37132064 54707 55 17 1303213769841 MEIS2
SE_02_069400160 chr15:63492330-63515209 22879 160 8 6322412163198 USP3
SE_02_069400117 chr15:68576597-68636804 60207 117 27 1587832127398 CORO2B,PIAS1
SE_02_069400140 chr15:68816622-68820925 4303 140 2 99109178 ANP32A,MIR4312,ANP32A-IT1
SE_02_069400181 chr15:76327896-76341842 13946 181 3 3553120131956 ISL2,ETFA
SE_02_069400083 chr15:92808171-92833619 25448 83 8 775440460 LINC01578,ASB9P1,CHD2
SE_02_069400169 chr15:92880521-92885866 5345 169 3 1306072323 LINC01578,CHD2,MIR3175
SE_02_069400098 chr15:92900011-92917998 17987 98 3 518410129299 CHD2,MIR3175,LINC01578
SE_02_069400100 chr16:2150125-2155375 5250 100 3 21864015610 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_069400207 chr16:51144853-51153295 8442 207 6 201141219244 MIR548AI,SALL1
SE_02_069400045 chr16:85430155-85464674 34519 45 25 13115821180 MIR5093,GSE1
SE_02_069400119 chr16:85523615-85558375 34760 119 18 12585202050 GSE1
SE_02_069400070 chr16:85574726-85627368 52642 70 12 2045212234312 GSE1
SE_02_069400159 chr17:17663089-17695238 32149 159 8 8143661169210 SMCR2,RAI1
SE_02_069400142 chr17:17758165-17785360 27195 142 9 6562550129695 RAI1,SMCR5,RAI1-AS1,MIR6777,MIR33B
SE_02_069400194 chr17:17823841-17841234 17393 194 5 434436231174 SREBF1,SMCR5,MIR6777,MIR33B,TOM1L2
SE_02_069400024 chr17:20851944-20874187 22243 24 9 80511100381 CCDC144NL-AS1,CCDC144NL
SE_02_069400092 chr17:2391564-2404392 12828 92 8 3552030214609 MNT,LOC284009,SMG6,SRR,METTL16
SE_02_069400131 chr17:3878324-3895193 16869 131 7 5546221421078 CAMKK1,P2RX1,C17ORF85,ITGAE
SE_02_069400005 chr17:43231432-43253253 21821 5 12 07000 RNU2-1,TMEM106A,LINC00854
SE_02_069400002 chr17:43265867-43301306 35439 2 23 00000 RNU2-1,LINC00854
SE_02_069400101 chr17:43354656-43369152 14496 101 7 5982023400 ARL4D,LINC00910
SE_02_069400038 chr17:47988840-48023810 34970 38 25 8741458120 PNPO,NFE2L1,PRR15L,CDK5RAP3,SP2-AS1,COPZ2,MIR152,CBX1,SNX11
SE_02_069400030 chr17:48990242-49001726 11484 30 9 2441161166305 IGF2BP1,SNF8,GIP
SE_02_069400224 chr17:49190849-49201996 11147 224 6 31612801994 FLJ40194,GNGT2,ABI3,PHOSPHO1,ZNF652
SE_02_069400205 chr17:50556770-50594227 37457 205 12 1083119704971976 CACNA1G,CACNA1G-AS1,SPATA20,ABCC3,EPN3,MYCBPAP
SE_02_069400196 chr17:55414900-55442549 27649 196 10 713187576220 MMD
SE_02_069400022 chr17:57510714-57578646 67932 22 33 196774848646 MSI2,LOC101927557,LOC101927539
SE_02_069400023 chr17:57867833-57953016 85183 23 40 23033429350967 CUEDC1,MRPS23,VEZF1,MSI2
SE_02_069400113 chr17:59152608-59162045 9437 113 2 198100032217 SKA2,PRR11,MIR454,MIR301A,TRIM37,SMG8
SE_02_069400180 chr17:7192087-7215755 23668 180 11 56446022671349 DLG4,DVL2,CLDN7,MIR324,ACADVL,ASGR1,ELP5,PHF23,CTDNEP1,GABARAP
SE_02_069400046 chr17:72939653-72956483 16830 46 17 5561315076 SLC39A11,C17orf80
SE_02_069400120 chr17:75010597-75035956 25359 120 6 821806136878 ICT1,KCTD2,HID1-AS1,ATP5H,HID1,CDR2L,OTOP3
SE_02_069400088 chr17:7685184-7696280 11096 88 3 27876048501 WRAP53,TP53,EFNB3,ATP1B2,DNAH2
SE_02_069400074 chr17:7825053-7845307 20254 74 14 5401951354842 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,CD68,TP53,TRAPPC1,EFNB3,KCNAB3,FXR2
SE_02_069400226 chr17:80592058-80616275 24217 226 12 6731591190 RPTOR
SE_02_069400216 chr17_GL000205v2_random:87335-90905 3570 216 2 00000 MGC70870
SE_02_069400153 chr18:34210891-34224911 14020 153 10 31220130352 NOL4
SE_02_069400183 chr19:12942462-12965717 23255 183 4 66433151661488 RAD23A,CALR,GADD45GIP1,FARSA,DAND5,MIR6515,SYCE2,NFIX,MIR5695
SE_02_069400087 chr19:13151949-13168114 16165 87 8 429122194519 IER2,STX10,LYL1,TRMT1,NACC1,NFIX
SE_02_069400093 chr19:17235051-17261514 26463 93 12 726738171771504 USHBP1,NR2F6,USE1,MRPL34,ABHD8,DDA1,ANKLE1,BABAM1,OCEL1
SE_02_069400039 chr19:18278718-18305520 26802 39 8 7494501112707 MIR3188,JUND,PDE4C,LSM4,PGPEP1,LOC729966,KIAA1683
SE_02_069400124 chr19:18415914-18430047 14133 124 3 390267245502 SSBP4,GDF15,MIR3189,ISYNA1,LRRC25,PDE4C,PGPEP1,UBA52,LSM4
SE_02_069400053 chr19:47097889-47114494 16605 53 2 448300161324 ZC3H4,TMEM160,SAE1
SE_02_069400052 chr19:49478535-49490309 11774 52 3 404385227719 RPL13A,FLT3LG,SNORD32A,PIH1D1,MIR150,SNORD35B,FCGRT,RCN3,SNORD33,SNORD34,ALDH16A1,RPS11,SNORD35A,SLC17A7
SE_02_069400094 chr19:49817541-49821099 3558 94 2 11899018389 MED25,MIR6800,PTOV1,FUZ,MIR6799,PTOV1-AS2,PTOV1-AS1,PNKP,MIR4749,RPS11,AKT1S1,ADM5,FCGRT,NUP62,IRF3,CPT1C,IL4I1,BCL2L12,AP2A1,PRMT1
SE_02_069400185 chr2:10120409-10125040 4631 185 2 12317115401 RRM2,C2ORF48,CYS1
SE_02_069400103 chr2:159612205-159617584 5379 103 2 1061300124219 BAZ2B,LOC643072
SE_02_069400107 chr2:163713749-163737336 23587 107 10 597221427103 FIGN
SE_02_069400208 chr2:165461952-165475515 13563 208 6 2966707839 CSRNP3
SE_02_069400162 chr2:171154535-171161737 7202 162 6 16618166304 TLK1
SE_02_069400184 chr2:173401709-173417064 15355 184 6 43040630 CDCA7
SE_02_069400179 chr2:178891735-178911531 19796 179 18 5489306532 CCDC141,TTN
SE_02_069400048 chr2:181669406-181685706 16300 48 9 402202290399 NEUROD1,CERKL
SE_02_069400167 chr2:200862266-200865424 3158 167 1 964205181 CLK1,RNU6-31P,PPIL3,NIF3L1,BZW1
SE_02_069400134 chr2:218952483-218968638 16155 134 5 3701253174711 CDK5R2,LOC100129175,FEV,LINC00608,MIR375,CRYBA2,LINC01494
SE_02_069400013 chr2:231705882-231713007 7125 13 2 294691128927 PTMA,MIR1244-2
SE_02_069400222 chr2:238234499-238256372 21873 222 5 64856131271450 PER2,HES6,LOC643387,LOC151174,ILKAP
SE_02_069400031 chr2:38071386-38110045 38659 31 13 13746476127466 CYP1B1,CYP1B1-AS1,RMDN2-AS1
SE_02_069400171 chr2:43219846-43233604 13758 171 3 4416402031414 THADA,ZFP36L2,LINC01126
SE_02_069400080 chr2:44934332-44948569 14237 80 7 384570261594 SIX3-AS1,SIX3
SE_02_069400182 chr2:61535953-61539755 3802 182 2 951040114428 XPO1
SE_02_069400029 chr2:70085224-70089564 4340 29 1 135440119686 PCBP1-AS1,PCBP1,LOC100133985
SE_02_069400122 chr2:70117388-70143537 26149 122 7 725605144273 LOC100133985,PCBP1,PCBP1-AS1,C2ORF42
SE_02_069400077 chr2:85523858-85542282 18424 77 5 5509712100684 PARTICL,MAT2A,VAMP8,GGCX,VAMP5
SE_02_069400199 chr2:88007026-88025593 18567 199 3 582162200 KRCC1,RGPD1,SMYD1
SE_02_069400036 chr20:17964892-17974577 9685 36 6 292355147434 SNX5,MGME1,SNORD17
SE_02_069400073 chr20:46777461-46815141 37680 73 13 10861541730 SLC2A10,EYA2
SE_02_069400063 chr20:47348725-47361600 12875 63 5 29984132732 ZMYND8,LOC100131496
SE_02_069400075 chr20:49277414-49282310 4896 75 1 207144134444 SNORD12B,ZFAS1,SNORD12,SNORD12C,ZNFX1
SE_02_069400095 chr20:53588685-53624312 35627 95 13 849221143174 LOC101927770,ZNF217
SE_02_069400150 chr20:58889774-58907831 18057 150 8 5336470901 GNAS,GNAS-AS1,LOC101927932
SE_02_069400200 chr21:15052070-15066306 14236 200 4 34114370241 NRIP1
SE_02_069400114 chr21:37365344-37369615 4271 114 2 12118123159 DYRK1A
SE_02_069400125 chr3:100261028-100273714 12686 125 12 30713601260 TBC1D23
SE_02_069400041 chr3:101317141-101328037 10896 41 5 236265166249 IMPG2,SENP7,TFG,TRMT10C
SE_02_069400099 chr3:120091523-120096539 5016 99 4 142371112433 GSK3B
SE_02_069400096 chr3:123068611-123112290 43679 96 21 11121543133417 PDIA5,SEMA5B,MIR7110
SE_02_069400067 chr3:129181298-129184989 3691 67 2 10311046139 CNBP,ISY1-RAB43
SE_02_069400202 chr3:143970540-143976985 6445 202 4 18117065436 C3ORF58
SE_02_069400086 chr3:149968063-149972701 4638 86 3 13636069451 LOC646903,PFN2,TMEM183B
SE_02_069400139 chr3:177194917-177198837 3920 139 1 9711019287 TBL1XR1
SE_02_069400210 chr3:185389677-185407844 18167 210 13 459592250 MAP3K13
SE_02_069400151 chr3:185822437-185826307 3870 151 1 591082259 IGF2BP2
SE_02_069400104 chr3:185934566-185938054 3488 104 3 1318121389 TRA2B,LOC344887
SE_02_069400118 chr3:186782699-186785986 3287 118 1 14824148224 EIF4A2,SNORD2,LOC102724699,SNORA63,RFC4,SNORA4,SNORA81,MIR1248
SE_02_069400211 chr3:50125695-50147888 22193 211 18 5699473105106 RBM5-AS1,MIR566,SEMA3F,GNAT1,RBM5
SE_02_069400188 chr3:77065987-77084998 19011 188 14 483001260 ROBO2
SE_02_069400212 chr3:97970164-97985603 15439 212 7 369187227200 MINA,GABRR3
SE_02_069400102 chr4:41744295-41753593 9298 102 5 24603181637 PHOX2B
SE_02_069400221 chr4:82371621-82374335 2714 221 1 902053223 HNRNPD
SE_02_069400206 chr5:124729997-124749910 19913 206 13 421142335346 ZNF608
SE_02_069400220 chr5:36873965-36880952 6987 220 4 121381129509 NIPBL,NIPBL-AS1
SE_02_069400047 chr6:113854249-113860405 6156 47 4 132140149400 MARCKS,FLJ34503,LINC01268
SE_02_069400223 chr6:138485267-138508400 23133 223 5 65860360109 NHSL1,MIR3145,HEBP2
SE_02_069400173 chr6:151449761-151457412 7651 173 5 237251113213 ARMT1,RMND1,CCDC170
SE_02_069400079 chr6:156774216-156791792 17576 79 5 385121119634 MIR4466,ARID1B
SE_02_069400027 chr6:20686097-20708979 22882 27 14 5621681080 CDKAL1
SE_02_069400219 chr6:24719166-24722233 3067 219 2 846516017 C6ORF62
SE_02_069400176 chr6:26048277-26066517 18240 176 7 553642828178 HIST1H1C,HFE,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H3A,HIST1H1T,HIST1H4B,HIST1H2BB,HIST1H4C,HIST1H3B,HIST1H4A
SE_02_069400043 chr6:26120605-26126986 6381 43 3 249509949227 HIST1H2AC,HIST1H2BC,HFE,HIST1H2BD,HIST1H1E,HIST1H1T,HIST1H4C,HIST1H2BE,HIST1H3A,HIST1H3D,HIST1H3B,HIST1H4A,HIST1H4D,HIST1H4B,HIST1H1D
SE_02_069400112 chr6:26195271-26199299 4028 112 1 17027810222 HIST1H3D,HIST1H2AD,HIST1H4G,HIST1H3E,HIST1H2BE,HIST1H4D,HIST1H2BG,HIST1H2BF,HIST1H2AE,HIST1H2BD,HIST1H4E,HIST1H4F,HIST1H1E,HIST1H1D
SE_02_069400129 chr6:26203342-26206710 3368 129 1 1502403091 HIST1H4E,HIST1H4G,HIST1H3E,HIST1H2BE,HIST1H4D,HIST1H2BG,HIST1H2BF,HIST1H2AE,HIST1H2BD,HIST1H4F,HIST1H1E,HIST1H1D,HIST1H2BH,HIST1H2AD,HIST1H3F
SE_02_069400172 chr6:27822795-27826944 4149 172 1 176225022379 HIST1H4J,HIST1H2AL,HIST1H3I,HIST1H2AK,HIST1H2BM,HIST1H2AJ,HIST1H2BN,HIST1H2AI,HIST1H4K,HIST1H4L,HIST1H2BL,HIST1H1B,HIST1H3H
SE_02_069400130 chr6:27834977-27838404 3427 130 1 9218422695 HIST1H2AK,HIST1H2AL,HIST1H3I,HIST1H2BM,HIST1H2AJ,HIST1H2BN,HIST1H2AI,HIST1H4K,HIST1H4L,HIST1H2BL,HIST1H4J,HIST1H1B,HIST1H3H
SE_02_069400132 chr6:27893432-27903638 10206 132 4 310557512195 HIST1H2BO,HIST1H2AL,HIST1H3I,HIST1H2AM,HIST1H4L,HIST1H3J,OR2B2,HIST1H1B
SE_02_069400152 chr6:3334289-3367869 33580 152 21 9801843940 SLC22A23,PSMG4
SE_02_069400166 chr6:33809912-33875289 65377 166 21 2068134031121689 MLN,MIR7159,LEMD2,LINC01016
SE_02_069400168 chr6:34390441-34399346 8905 168 2 23245035207 RPS10-NUDT3,NUDT3,RPS10
SE_02_069400106 chr6:36593149-36597253 4104 106 2 15068032158 SRSF3,STK38,MIR3925
SE_02_069400123 chr6:42781046-42784261 3215 123 3 622701893 TBCC,GLTSCR1L
SE_02_069400127 chr6:44237233-44249522 12289 127 6 408138149363 HSP90AB1,SLC29A1,SLC35B2,TMEM151B,TCTE1,NFKBIE,MIR4647
SE_02_069400209 chr6:56539072-56551845 12773 209 5 285510580 DST
SE_02_069400115 chr6:56804439-56854111 49672 115 23 11366071158394 LOC101930010,DST
SE_02_069400229 chr6:65700820-65709448 8628 229 9 236901633 EYS
SE_02_069400028 chr7:105008399-105021529 13130 28 8 353590110724 KMT2E,KMT2E-AS1,LINC01004
SE_02_069400161 chr7:123746287-123752701 6414 161 4 18255053394 WASL
SE_02_069400190 chr7:148697816-148701111 3295 190 1 9023063288 CUL1
SE_02_069400034 chr7:23467340-23477387 10047 34 4 205580112262 IGF2BP3,RPS2P32,MALSU1
SE_02_069400032 chr7:26175585-26203976 28391 32 6 117415802221201 HNRNPA2B1,CBX3,NFE2L3
SE_02_069400192 chr7:7553572-7581875 28303 192 5 9105321110356 LOC101927391,MIOS,COL28A1
SE_02_069400082 chr7:82439934-82451799 11865 82 3 280190102201 CACNA2D1
SE_02_069400081 chr7:9180108-9201097 20989 81 17 661034690 PER4
SE_02_069400214 chr8:124593274-124646127 52853 214 16 155510961020 MTSS1,NDUFB9
SE_02_069400001 chr8:127270793-127352210 81417 1 21 24051420291135 CASC21,CASC8,CCAT2,POU5F1B
SE_02_069400003 chr8:127624783-127668301 43518 3 18 13402011860 CASC11,MYC
SE_02_069400007 chr8:127734284-127740535 6251 7 3 1632073547 MYC,CASC11
SE_02_069400006 chr8:127793756-127824433 30677 6 11 83353440207 MIR1204
SE_02_069400186 chr8:28875706-28893341 17635 186 12 350272101377 HMBOX1,INTS9
SE_02_069400057 chr8:71352734-71364786 12052 57 5 26861187223 EYA1
SE_02_069400146 chr8:72536225-72541764 5539 146 2 11617261216 KCNB2
SE_02_069400174 chr8:96889634-96894352 4718 174 8 11120180 CPQ
SE_02_069400056 chr9:14307313-14324093 16780 56 11 41070265217 NFIB
SE_02_069400232 chrX:115727962-115737327 9365 232 6 00000 PLS3
SE_02_069400084 chrX:115843968-115888592 44624 84 30 270000 DANT2
SE_02_069400234 chrX:38800744-38806088 5344 234 1 103100105665 MID1IP1,MID1IP1-AS1
SE_02_069400195 chrX:41083860-41090827 6967 195 2 13417084228 USP9X
SE_02_069400175 chrX:53682762-53686925 4163 175 2 571000200 HUWE1

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM3165663
Input ID: Name:GSM3165664
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb