Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_078900031 chr1:156086431-156147551 61120 31 16 1458 135 6 392 2017 LMNA,LAMTOR2,RAB25,UBQLN4,SEMA4A,SLC25A44,MEX3A
SE_02_078900062 chr1:16115616-16192414 76798 62 18 2174 222 6 335 2059 EPHA2,FAM131C,RSG1,ARHGEF19
SE_02_078900186 chr1:19384616-19470187 85571 186 38 2729 386 14 145 384 CAPZB
SE_02_078900163 chr1:21302637-21343414 40777 163 16 1205 108 3 87 0 ECE1,LOC100506801
SE_02_078900024 chr1:2189081-2331616 142535 24 43 5060 261 11 413 3816 FAAP20,MORN1,SKI,LOC100129534
SE_02_078900151 chr1:223699403-223749281 49878 151 15 1325 159 6 109 801 CAPN2,CAPN8
SE_02_078900098 chr1:225735430-225820420 84990 98 14 2347 273 10 195 861 EPHX1,SRP9
SE_02_078900127 chr1:234585228-234615089 29861 127 10 851 41 4 0 780 IRF2BP2,LOC101927787,LINC00184
SE_02_078900026 chr1:27488949-27607741 118792 26 23 2936 165 5 1578 2192 AHDC1,WASF2,FGR
SE_02_078900085 chr1:36342958-36389276 46318 85 12 1342 68 4 218 1065 STK40,EVA1B,SH3D21,LSM10
SE_02_078900065 chr1:39081468-39214935 133467 65 45 3206 221 8 489 559 MACF1,NDUFS5
SE_02_078900180 chr1:53288213-53328630 40417 180 12 1157 126 4 241 560 LOC105378732,LRP8,LOC100507564,MAGOH
SE_02_078900087 chr1:93567586-93642721 75135 87 36 1996 155 10 203 1343 BCAR3,LOC100129046
SE_02_078900146 chr1:94039394-94118946 79552 146 25 2362 94 47 332 1856 ABCA4
SE_02_078900159 chr1:9835343-9914105 78762 159 19 2122 120 2 244 1140 CTNNBIP1,LZIC,NMNAT1,CLSTN1
SE_02_078900121 chr10:104299478-104351212 51734 121 13 1340 125 2 154 1974 ITPRIP,LOC101927472,GSTO2,GSTO1,CFAP58,CFAP58-AS1,MIR4482
SE_02_078900060 chr10:112982684-113108543 125859 60 48 3483 83 26 615 139 TCF7L2
SE_02_078900113 chr10:125080744-125162844 82100 113 25 2555 57 13 495 520 CTBP2,MIR4296
SE_02_078900070 chr10:16942946-17042506 99560 70 40 3058 299 42 153 541 CUBN,RSU1
SE_02_078900142 chr10:21510173-21529250 19077 142 9 354 4 0 508 1070 SKIDA1,MLLT10,CASC10,MIR1915
SE_02_078900083 chr10:6202201-6248572 46371 83 11 1831 49 5 125 2159 PFKFB3,MIR3155B
SE_02_078900099 chr10:71963685-72014887 51202 99 15 1562 161 15 143 1539 CHST3
SE_02_078900176 chr10:72296502-72337328 40826 176 7 1150 80 0 111 807 DNAJB12,DDIT4
SE_02_078900165 chr10:79066608-79160510 93902 165 22 2758 79 27 494 689 ZMIZ1,ZMIZ1-AS1
SE_02_078900183 chr10:80443994-80506177 62183 183 15 1736 194 11 158 278 TSPAN14,LOC102723703,SH2D4B,FAM213A,LOC101929574
SE_02_078900090 chr10:93412526-93482707 70181 90 25 2030 224 8 160 389 MYOF,CEP55
SE_02_078900052 chr11:118906910-118930314 23404 52 2 561 38 2 428 659 BCL9L,MIR4492,CXCR5,UPK2,FOXR1
SE_02_078900082 chr11:65471091-65509118 38027 82 10 1086 112 4 50 963 MALAT1,SCYL1,LTBP3,NEAT1,MIR612
SE_02_078900046 chr11:69638137-69645126 6989 46 1 193 3 1 89 472 CCND1,ORAOV1
SE_02_078900147 chr11:76781968-76839698 57730 147 18 1682 145 3 125 904 LOC101928837,TSKU,ACER3
SE_02_078900123 chr12:106074531-106148456 73925 123 25 2057 107 10 300 747 NUAK1
SE_02_078900074 chr12:108798428-108859741 61313 74 22 1709 71 3 120 1206 SSH1,MIR619,DAO
SE_02_078900126 chr12:111396551-111458898 62347 126 21 1463 128 15 229 2042 ATXN2,SH2B3,FAM109A
SE_02_078900066 chr12:113191120-113273468 82348 66 25 2143 159 1 115 1707 TPCN1,RITA1,IQCD,CCDC42B,MIR6762,DDX54,MIR7106
SE_02_078900048 chr12:12714176-12760575 46399 48 22 1279 66 8 202 598 CDKN1B,APOLD1,MIR613,GPR19
SE_02_078900079 chr12:3073091-3152496 79405 79 26 2736 312 7 231 235 TSPAN9
SE_02_078900072 chr12:49183212-49235916 52704 72 21 1256 95 1 220 629 TUBA1A,TUBA1C
SE_02_078900100 chr12:55715399-55731244 15845 100 1 385 28 3 145 2280 CD63,BLOC1S1-RDH5,BLOC1S1,RDH5,ITGA7,METTL7B,GDF11
SE_02_078900182 chr12:6321315-6342956 21641 182 6 640 48 11 109 1468 TNFRSF1A,PLEKHG6,LTBR,SCNN1A
SE_02_078900038 chr12:6530923-6558094 27171 38 5 905 89 1 217 2727 NCAPD2,GAPDH,NOP2,IFFO1,CHD4,MRPL51,SCARNA11,SCARNA10
SE_02_078900109 chr12:75974042-76035493 61451 109 20 1709 56 9 212 792 PHLDA1,NAP1L1
SE_02_078900132 chr12:89343162-89355478 12316 132 5 355 33 0 184 485 DUSP6
SE_02_078900055 chr13:109741844-109745460 3616 55 3 101 5 0 16 0 LINC00676,IRS2
SE_02_078900004 chr13:109764168-109791459 27291 4 8 636 35 3 233 1277 IRS2,LINC00676
SE_02_078900001 chr13:110092121-110139122 47001 1 15 1378 39 4 27 0 LINC00396
SE_02_078900007 chr13:110215859-110263122 47263 7 18 1478 12 10 94 41 COL4A1,COL4A2
SE_02_078900023 chr13:110305934-110309436 3502 23 1 117 7 3 56 396 COL4A1,COL4A2,MIR8073
SE_02_078900086 chr14:103537847-103608069 70222 86 17 2167 196 5 114 1190 APOPT1,BAG5,TRMT61A,KLC1,CKB
SE_02_078900105 chr14:105465084-105485057 19973 105 2 651 34 0 127 2412 MTA1,CRIP2,C14ORF80,CRIP1,TMEM121,LOC100507437
SE_02_078900091 chr14:68774342-68824991 50649 91 10 1372 39 10 384 1034 ZFP36L1
SE_02_078900042 chr14:76900344-76963923 63579 42 17 1739 87 2 238 0 IRF2BPL
SE_02_078900039 chr14:77013766-77070737 56971 39 14 1621 125 13 539 1299 IRF2BPL,LOC102724190,LOC283575,CIPC
SE_02_078900101 chr15:60359962-60427791 67829 101 26 1791 134 7 196 824 ANXA2,ICE2
SE_02_078900068 chr15:63322577-63382752 60175 68 28 1660 118 9 159 1195 CA12,APH1B,LOC102723344
SE_02_078900015 chr15:68577755-68675350 97595 15 29 2605 67 3 220 515 CORO2B
SE_02_078900110 chr15:92797454-92856698 59244 110 25 1933 60 0 58 0 CHD2,LINC01578,MIR3175,ASB9P1
SE_02_078900187 chr16:2120399-2128004 7605 187 1 296 27 0 20 112 PKD1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,SNORD60,MIR1225,RAB26,MIR6511B2,SNHG19
SE_02_078900138 chr16:4658566-4702185 43619 138 5 2158 179 2 150 3991 ANKS3,NUDT16L1,MIR6769A,MGRN1,UBALD1,C16ORF71
SE_02_078900115 chr16:51146432-51164517 18085 115 9 445 14 1 278 244 MIR548AI,SALL1
SE_02_078900089 chr16:53041937-53100936 58999 89 13 1470 82 3 180 187 CHD9
SE_02_078900153 chr16:57622173-57655085 32912 153 4 1109 70 5 118 869 ADGRG1,DRC7,ADGRG3
SE_02_078900088 chr16:75233426-75268396 34970 88 7 1297 126 8 188 2307 BCAR1,CTRB2,CTRB1,LOC100506281
SE_02_078900179 chr16:85104873-85177103 72230 179 18 2993 151 20 205 1055 LOC400548,FAM92B,KIAA0513
SE_02_078900014 chr16:85541542-85674597 133055 14 30 5818 111 2 658 2568 GSE1,GINS2
SE_02_078900118 chr16:87834293-87872397 38104 118 11 1750 121 1 91 1106 MIR6775,SLC7A5
SE_02_078900169 chr16:89289694-89345538 55844 169 13 2033 144 6 61 1702 LOC100287036,ANKRD11
SE_02_078900144 chr16:89904597-89926192 21595 144 3 910 84 12 88 2204 TUBB3,MC1R,TCF25,CENPBD1,AFG3L1P,DEF8
SE_02_078900172 chr17:40303306-40355259 51953 172 15 1182 67 0 730 1617 RARA-AS1,RARA,CDC6,GJD3
SE_02_078900017 chr17:43231426-43323810 92384 17 36 530 75 0 8 359 RNU2-1,TMEM106A,LINC00854
SE_02_078900185 chr17:57255644-57314159 58515 185 15 1604 22 8 399 1220 MSI2
SE_02_078900036 chr17:57400545-57606277 205732 36 75 5882 182 20 1475 173 LOC101927557,MSI2,LOC101927539
SE_02_078900020 chr17:57860568-57956193 95625 20 24 2585 147 10 418 1905 CUEDC1,MRPS23,VEZF1
SE_02_078900167 chr17:66454755-66544258 89503 167 31 2528 160 6 199 28 PRKCA,PRKCA-AS1
SE_02_078900028 chr17:72362682-72541154 178472 28 54 5234 83 20 693 424 LINC00673
SE_02_078900045 chr17:75674695-75756217 81522 45 20 2305 114 9 340 4884 SAP30BP,ITGB4,SMIM5,GALK1,SMIM6,UNK,H3F3B,RECQL5,MIR4738
SE_02_078900041 chr17:75847494-75879366 31872 41 6 930 102 8 195 1618 TRIM47,WBP2,MRPL38,UNC13D,TRIM65
SE_02_078900166 chr17:76360018-76386814 26796 166 9 742 93 2 85 1183 SPHK1,PRPSAP1
SE_02_078900149 chr17:77303901-77334496 30595 149 7 1023 35 5 59 358 SEPT9
SE_02_078900013 chr17:77350394-77495071 144677 13 40 4826 283 5 406 2831 SEPT9,MIR4316
SE_02_078900076 chr17:78860255-78900899 40644 76 11 1472 101 11 79 617 CEP295NL,TIMP2,USP36
SE_02_078900158 chr17:80825506-80841945 16439 158 4 633 15 1 32 87 RPTOR,LOC101928855
SE_02_078900049 chr17:81017785-81103318 85533 49 20 3571 287 4 244 2119 BAIAP2,BAIAP2-AS1,CHMP6,MIR3065,MIR1250,AATK,MIR657,MIR338
SE_02_078900022 chr17:81386231-81438035 51804 22 11 1585 115 2 417 274 BAHCC1,MIR4740,LOC100130370,MIR3186
SE_02_078900160 chr19:11126521-11204027 77506 160 13 2628 324 19 258 3900 KANK2,SPC24,LDLR,DOCK6,C19ORF80,MIR6886
SE_02_078900181 chr19:1247268-1260903 13635 181 1 542 8 1 192 1697 MIDN,C19ORF24,CIRBP,CIRBP-AS1,ATP5D,STK11,CBARP,EFNA2
SE_02_078900157 chr19:12777150-12796549 19399 157 4 439 38 1 305 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1
SE_02_078900012 chr19:12983023-13099081 116058 12 29 2814 123 4 1258 2473 NFIX,LYL1,FARSA,DAND5,MIR6515,RAD23A,GADD45GIP1,CALR,TRMT1,NACC1
SE_02_078900129 chr19:13131860-13182411 50551 129 10 1350 67 4 182 2674 NACC1,IER2,STX10,LYL1,TRMT1
SE_02_078900188 chr19:17067615-17145720 78105 188 15 2461 234 9 78 695 MYO9B,HAUS8,CPAMD8
SE_02_078900094 chr19:1825848-1883343 57495 94 13 1954 137 2 170 2804 REXO1,KLF16,ABHD17A,ATP8B3,LOC100288123,ADAT3,MIR1909,SCAMP4
SE_02_078900162 chr19:2026990-2070406 43416 162 17 1526 60 2 115 2093 MKNK2,IZUMO4,MOB3A,BTBD2
SE_02_078900075 chr19:3335803-3414124 78321 75 21 2513 97 5 75 541 NFIC
SE_02_078900058 chr19:38647653-38736582 88929 58 26 2727 328 8 468 3301 CAPN12,ACTN4,EIF3K,MAP4K1,LGALS7
SE_02_078900175 chr19:42241882-42257139 15257 175 1 359 21 1 489 1342 GSK3A,ERF,DEDD2,ZNF526,PRR19,PAFAH1B3,CIC
SE_02_078900064 chr19:47079544-47114634 35090 64 8 1069 33 1 211 1138 ZC3H4,TMEM160,SAE1
SE_02_078900081 chr19:6039143-6110573 71430 81 25 1840 117 10 55 432 RFX2,ACSBG2
SE_02_078900040 chr2:104825915-104864490 38575 40 11 821 38 2 518 570 POU3F3,LINC01158,LINC01159
SE_02_078900010 chr2:11481755-11516096 34341 10 17 939 33 1 60 0 GREB1,MIR4429,E2F6
SE_02_078900096 chr2:11688158-11712449 24291 96 4 747 72 0 0 0 LPIN1,NTSR2
SE_02_078900011 chr2:11738441-11754835 16394 11 5 475 45 3 18 256 LPIN1,MIR548S
SE_02_078900002 chr2:11824857-11873633 48776 2 21 1437 15 5 85 351 LPIN1,MIR4262
SE_02_078900092 chr2:12701499-12744690 43191 92 19 1205 33 4 372 906 MIR3125,TRIB2
SE_02_078900067 chr2:15665821-15678370 12549 67 8 380 35 5 60 0 LOC101926966
SE_02_078900005 chr2:15939150-15944369 5219 5 1 122 0 1 119 794 MYCN,MYCNOS,MYCNUT
SE_02_078900116 chr2:231665350-231716568 51218 116 16 1625 64 7 258 1070 PTMA,MIR1244-2
SE_02_078900177 chr2:233025928-233124976 99048 177 23 3214 150 13 150 706 NEU2,INPP5D,NGEF
SE_02_078900128 chr2:240947217-241012452 65235 128 21 1945 155 1 172 2039 SNED1,LOC200772
SE_02_078900170 chr2:43217554-43228735 11181 170 3 381 16 0 198 1151 LINC01126,ZFP36L2
SE_02_078900016 chr2:8676189-8693904 17715 16 5 513 11 1 258 321 ID2,ID2-AS1
SE_02_078900164 chr20:10490751-10573689 82938 164 36 2079 192 4 243 55 SLX4IP
SE_02_078900050 chr20:10597126-10675413 78287 50 29 2025 115 13 928 2385 SLX4IP,MIR6870,JAG1
SE_02_078900117 chr20:25219927-25257299 37372 117 13 1173 154 3 66 1123 PYGB,ENTPD6,LOC101926889
SE_02_078900103 chr20:32439152-32485690 46538 103 13 1269 82 0 341 1944 NOL4L,ASXL1,LOC101929698
SE_02_078900140 chr20:36819741-36867166 47425 140 15 1100 76 3 118 732 SOGA1,TLDC2,DSN1
SE_02_078900154 chr20:3794676-3809482 14806 154 1 445 49 1 95 1828 CDC25B,LOC101929125,CENPB,C20ORF27,AP5S1,MAVS,SPEF1
SE_02_078900034 chr20:47304813-47371310 66497 34 15 1890 10 4 206 1313 ZMYND8,LOC100131496
SE_02_078900171 chr20:48658119-48732928 74809 171 23 2369 223 6 141 1077 PREX1
SE_02_078900084 chr20:48745738-48847157 101419 84 36 2909 200 15 168 275 PREX1
SE_02_078900078 chr20:50233631-50314250 80619 78 35 2412 183 23 298 1060 LINC01272,LINC01271,LINC01270,CEBPB,CEBPB-AS1
SE_02_078900119 chr20:53578638-53624072 45434 119 17 1109 8 1 169 449 ZNF217,LOC101927770
SE_02_078900043 chr21:45970002-46001764 31762 43 15 1240 101 2 91 2970 LOC101928796,COL6A1
SE_02_078900071 chr21:46037898-46101129 63231 71 14 2346 171 2 36 164 COL6A2
SE_02_078900008 chr21:8217703-8260773 43070 8 18 0 0 0 0 0 MIR663A,MIR6724-1,RNA28S5,RNA5-8S5,LOC100507412,MIR3687-1,MIR3648-1,RNA18S5
SE_02_078900003 chr21:8377298-8466751 89453 3 34 0 0 0 0 0 RNA18S5,RNA5-8S5,LOC100507412,MIR6724-1,RNA45S5,RNA28S5
SE_02_078900134 chr22:17558187-17585275 27088 134 8 956 69 2 19 638 SLC25A18,LOC101929372,ATP6V1E1
SE_02_078900051 chr22:24952015-25031061 79046 51 36 1789 77 2 77 460 KIAA1671,TMEM211
SE_02_078900104 chr22:36322451-36388084 65633 104 27 1934 108 7 227 1020 MYH9,MIR6819
SE_02_078900122 chr22:37501078-37567282 66204 122 19 1933 199 17 265 1961 CDC42EP1,CARD10,LGALS2,MFNG,GGA1
SE_02_078900155 chr22:41392718-41449341 56623 155 11 1468 154 0 221 1819 TEF,TOB2,ACO2,PHF5A
SE_02_078900136 chr22:42905266-42963383 58117 136 20 1699 217 3 57 181 PACSIN2,ARFGAP3
SE_02_078900131 chr22:45491318-45554263 62945 131 17 2093 100 4 146 1500 FBLN1
SE_02_078900018 chr22:46040298-46060185 19887 18 1 600 58 3 97 1484 PRR34,LINC00899,PRR34-AS1,MIR3619,LOC730668,MIRLET7BHG
SE_02_078900021 chr22:46068832-46082317 13485 21 1 388 13 1 94 0 PRR34,MIR3619,LINC00899,PRR34-AS1,MIRLET7BHG,MIRLET7A3,MIR4763,MIRLET7B
SE_02_078900035 chr22:46083452-46117788 34336 35 1 1364 79 3 95 1992 MIR3619,MIRLET7A3,MIRLET7BHG,MIRLET7B,MIR4763,PRR34,PPARA,LINC00899,PRR34-AS1
SE_02_078900124 chr22:46563509-46635464 71955 124 12 2651 308 8 69 131 GRAMD4,CELSR1
SE_02_078900009 chr22_KI270733v1_random:110440-179415 68975 9 36 0 0 0 0 0 RNA18S5,RNA5-8S5,MIR3687-1,RNA28S5,MIR6724-1,RNA45S5
SE_02_078900106 chr3:113209924-113298368 88444 106 31 2465 237 2 475 3390 BOC,CFAP44,LOC101929717
SE_02_078900133 chr3:129554410-129628092 73682 133 10 2257 241 9 422 4061 PLXND1,H1FOO,RHO
SE_02_078900061 chr3:147380880-147420175 39295 61 10 972 28 2 634 2256 ZIC1,ZIC4,LOC440982
SE_02_078900080 chr3:149528404-149659681 131277 80 65 3464 119 13 331 662 WWTR1-AS1,WWTR1
SE_02_078900032 chr3:181694793-181760290 65497 32 18 1482 3 3 680 894 SOX2-OT,SOX2
SE_02_078900047 chr3:184561725-184608602 46877 47 16 1347 65 0 418 1734 EPHB3,EIF2B5-AS1
SE_02_078900168 chr3:184677452-184742877 65425 168 18 1915 144 5 0 366 MAGEF1,LOC101928992
SE_02_078900161 chr3:186071679-186111217 39538 161 16 955 41 7 234 568 ETV5
SE_02_078900077 chr3:195139380-195225316 85936 77 28 2587 199 5 57 522 XXYLT1,XXYLT1-AS2,MIR3137,XXYLT1-AS1
SE_02_078900102 chr3:195859783-195915765 55982 102 15 2006 155 4 381 4093 MIR6829,TNK2,MUC4
SE_02_078900145 chr4:997529-1048020 50491 145 11 1961 181 5 241 2697 IDUA,FGFRL1,SLC26A1,DGKQ
SE_02_078900143 chr5:134501367-134531391 30024 143 6 702 64 7 372 814 JADE2,LOC101927934
SE_02_078900114 chr5:135993568-136061974 68406 114 25 1969 110 31 263 1364 TGFBI,VTRNA2-1,LECT2
SE_02_078900019 chr5:139632974-139746895 113921 19 21 2690 161 11 1171 572 LOC101929696,CXXC5,PSD2
SE_02_078900059 chr5:141493380-141535221 41841 59 10 1010 79 0 232 1542 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658
SE_02_078900135 chr5:142316831-142328643 11812 135 1 318 13 1 131 190 SPRY4,LOC101926941,SPRY4-IT1
SE_02_078900156 chr5:150573479-150657222 83743 156 30 2427 156 5 493 1832 SYNPO,MYOZ3,RBM22
SE_02_078900184 chr5:151647065-151709577 62512 184 20 1700 160 8 131 1864 CTB-113P19.1,SPARC,ATOX1
SE_02_078900137 chr5:16538922-16602253 63331 137 26 1667 155 2 91 80 FAM134B,LOC101929524
SE_02_078900148 chr5:172402132-172456631 54499 148 19 1605 163 3 125 338 SH3PXD2B
SE_02_078900120 chr5:1769679-1813903 44224 120 12 1450 198 2 58 400 NDUFS6,MRPL36,LOC101929034
SE_02_078900063 chr5:177440050-177460154 20104 63 1 500 30 8 303 2598 DBN1,GRK6,PRR7,PRR7-AS1,F12,DOK3,PDLIM7,PFN3
SE_02_078900027 chr5:178415385-178591352 175967 27 64 5452 427 24 272 345 COL23A1,CLK4
SE_02_078900029 chr5:88659396-88694376 34980 29 6 752 23 4 604 892 LINC00461,MIR9-2
SE_02_078900056 chr6:16667197-16763081 95884 56 38 2486 97 24 352 427 ATXN1
SE_02_078900107 chr6:36765067-36860070 95003 107 25 2817 262 15 246 2115 CPNE5,PPIL1,C6ORF89
SE_02_078900173 chr7:101094498-101144160 49662 173 19 1514 177 9 96 1538 SERPINE1,MIR4653,VGF,AP1S1,NAT16,TRIM56
SE_02_078900130 chr7:104923077-104987640 64563 130 22 1593 90 1 80 978 LHFPL3-AS2,LINC01004,KMT2E-AS1,KMT2E
SE_02_078900053 chr7:191818-247470 55652 53 11 1872 117 1 70 1226 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_078900178 chr7:2103301-2126167 22866 178 5 922 98 4 44 0 MAD1L1
SE_02_078900073 chr7:2606119-2664170 58051 73 20 2167 157 3 181 3365 IQCE,TTYH3,AMZ1
SE_02_078900108 chr7:4667713-4746988 79275 108 18 3039 57 6 96 458 FOXK1,AP5Z1,MIR4656
SE_02_078900033 chr7:5382127-5430907 48780 33 9 1689 40 0 353 1985 TNRC18
SE_02_078900139 chr7:74060035-74105262 45227 139 10 1170 64 5 116 1820 LIMK1,ELN
SE_02_078900097 chr7:74605917-74664215 58298 97 14 1280 98 1 60 199 GTF2I
SE_02_078900141 chr8:140567854-140647701 79847 141 19 2476 129 5 62 308 AGO2
SE_02_078900025 chr8:143926520-143958329 31809 25 1 1184 114 3 341 3629 PLEC,MIR661,EPPK1,PARP10,GRINA
SE_02_078900044 chr8:26571499-26661917 90418 44 29 2717 249 14 384 1417 DPYSL2
SE_02_078900095 chr8:28346267-28413156 66889 95 15 1750 79 4 205 1612 ZNF395,PNOC
SE_02_078900174 chr8:29339730-29354661 14931 174 5 418 33 0 104 891 DUSP4
SE_02_078900125 chr8:37780124-37846634 66510 125 16 1989 60 4 361 3091 BRF2,ADGRA2,ERLIN2,PROSC,LOC102723701,LOC728024
SE_02_078900111 chr8:38401121-38489020 87899 111 27 2400 130 3 345 3188 FGFR1,LETM2,WHSC1L1,C8ORF86
SE_02_078900030 chr9:124256199-124320736 64537 30 10 1963 132 5 296 902 NEK6,LOC100129034
SE_02_078900069 chr9:127494803-127577222 82419 69 23 2441 280 8 301 2699 FAM129B,LRSAM1,RPL12,STXBP1,SNORA65
SE_02_078900037 chr9:129451080-129507458 56378 37 17 1650 98 0 156 874 LINC00963
SE_02_078900152 chr9:129664869-129749230 84361 152 17 2510 191 13 170 1189 PRRX2,PTGES,PRRX2-AS1,NTMT1,ASB6,C9ORF50
SE_02_078900150 chr9:133904330-133994402 90072 150 21 3422 254 5 173 254 VAV2,LINC00094
SE_02_078900112 chr9:134320958-134388513 67555 112 19 2364 133 4 262 308 RXRA,MIR4669
SE_02_078900006 chrUn_GL000220v1:93868-158865 64997 6 27 0 0 0 0 0 RNA45S5,RNA5-8S5,LOC100507412,MIR6724-1,RNA28S5,RNA18S5
SE_02_078900093 chrX:115727556-115738935 11379 93 6 0 0 0 0 0 PLS3,PLS3-AS1
SE_02_078900054 chrX:115843598-115889011 45413 54 17 28 0 0 0 0 DANT2
SE_02_078900057 chrX:56763359-56784133 20774 57 7 232 15 0 0 0 LINC01420,UQCRBP1

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM3382305
Input ID: Name:GSM3382306
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb